1 Hpt#1
4-96 aa · 93 aa · 13.8% of protein
Raw token
Hpt:4:4.08e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKG_RS07865
Histidine kinase, CheA
Bacillus cereus VD200 · GCF_000290715
ClassHKTypeCheALength672 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290715#IKG_RS07865Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 672 aa (63.4%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
289-348 aa · 60 aa · 8.9% of protein
Raw token
H-kinase_dim:289:0.00000000402:348:67:673 HATPase_c#3
396-535 aa · 140 aa · 20.8% of protein
Raw token
HATPase_c:396:1.22e-17:535:140:1094 CheW#4
540-672 aa · 133 aa · 19.8% of protein
Raw token
CheW:540:1.18e-21:672:139:138- Raw architecture: Hpt:4:4.08e-17:96:93:84#H-kinase_dim:289:0.00000000402:348:67:67#HATPase_c:396:1.22e-17:535:140:109#CheW:540:1.18e-21:672:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290715::NZ_JH791819.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1542836-1545352Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKG_01496RefSeq proteinWP_001192608.1
Context group ID
GCF_000290715::NZ_JH791819.1::G00022Context members
IKG_RS07860IKG_RS07865
Partner locus tags
IKG_RS07860IKG_RS07865
Partner old locus tags
IKG_01495IKG_01496
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001192608.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X0F3D1Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X0F3D1_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKG_RS07865Primary locus identifier stored in the genes table.
Old locus tagIKG_01496Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791819.1Sequence record reported by the local genomic context database.
Genomic interval1 543 334-1 545 352 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 542 836-1 545 352 ntGCF_000290715::NZ_JH791819.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290715::NZ_JH791819.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791819.1All displayed genes belong to this local TCS context.
Neighborhood span1 542 836-1 545 352 nt2 517 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 542 836 nt1 545 352 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKG_RS07860GCF_000290715#IKG_RS07860
RRCheY
1 542 836-1 543 204 nt · Forward (+)
IKG_RS07865GCF_000290715#IKG_RS07865
HKCheACurrent focus
1 543 334-1 545 352 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021205#BCB4264_RS08355Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0838879
Simplified PFAM architecture for HKOC_0838879
PFAM domain coverage: 509 / 672 aa (75.7%)
1 aa672 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[289-347] | HATPase_c[396-535] | CheW[541-672]
- Domain count: 5
- Matched identifier: HKOC_0838879
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 289-347 ; HATPase_c 396-535 ; CheW 541-672
Cluster members and taxonomy
Representative gene: GCF_000021205#BCB4264_RS08355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 244 · GCF_000290715
AssemblyBaci_cere_VD200_V1 · Scaffoldhaploid
Genome composition6 274 216 bp · 35,0% GCBacillus cereus VD200
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key