1 HAMP#1
162-235 aa · 74 aa · 15.3% of protein
Raw token
HAMP:162:0.0000000000248:235:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKM_RS11315
Histidine kinase, Classic
Bacillus mycoides · GCF_000290695
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290695#IKM_RS11315Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 484 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-313 aa · 68 aa · 14.0% of protein
Raw token
HisKA:246:0.0000000000000913:313:68:643 HATPase_c#3
364-470 aa · 107 aa · 22.1% of protein
Raw token
HATPase_c:364:3.31e-28:470:107:109- Raw architecture: HAMP:162:0.0000000000248:235:74:69#HisKA:246:0.0000000000000913:313:68:64#HATPase_c:364:3.31e-28:470:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290695::NZ_JH791837.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2217742-2219876Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKM_02277RefSeq proteinWP_002185398.1
Context group ID
GCF_000290695::NZ_JH791837.1::G00026Context members
IKM_RS11310IKM_RS11315
Partner locus tags
IKM_RS11310IKM_RS11315
Partner old locus tags
IKM_02276IKM_02277
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002185398.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKM_RS11315Primary locus identifier stored in the genes table.
Old locus tagIKM_02277Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791837.1Sequence record reported by the local genomic context database.
Genomic interval2 218 422-2 219 876 nt1 455 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 217 742-2 219 876 ntGCF_000290695::NZ_JH791837.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290695::NZ_JH791837.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791837.1All displayed genes belong to this local TCS context.
Neighborhood span2 217 742-2 219 876 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 217 742 nt2 219 876 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKM_RS11310GCF_000290695#IKM_RS11310
RROmpR
2 217 742-2 218 422 nt · Forward (+)
IKM_RS11315GCF_000290695#IKM_RS11315
HKClassicCurrent focus
2 218 422-2 219 876 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS11315The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1584283
Simplified PFAM architecture for HKOC_1584283
PFAM domain coverage: 224 / 484 aa (46.3%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-234] | HisKA[247-312] | HATPase_c[364-470]
- Domain count: 3
- Matched identifier: HKOC_1584283
- Positioned domains: HAMP 184-234 ; HisKA 247-312 ; HATPase_c 364-470
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS11315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290695
AssemblyBaci_cere_VDM022_V1 · Scaffoldhaploid
Genome composition6 312 471 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key