1 Response_reg#1
7-119 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:7:1.68e-25:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKM_RS10545
Response regulator NarL family
Bacillus mycoides · GCF_000290695
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290695#IKM_RS10545Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 222 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-215 aa · 57 aa · 25.7% of protein
Raw token
HTH_LUXR:159:4.18e-25:215:57:58- Raw architecture: Response_reg:7:1.68e-25:119:113:111#HTH_LUXR:159:4.18e-25:215:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290695::NZ_JH791837.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2065656-2067478Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKM_02116RefSeq proteinWP_002185298.1
Context group ID
GCF_000290695::NZ_JH791837.1::G00023Context members
IKM_RS10545IKM_RS10550
Partner locus tags
IKM_RS10545IKM_RS10550
Partner old locus tags
IKM_02116IKM_02117
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002185298.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8KSM7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8KSM7_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKM_RS10545Primary locus identifier stored in the genes table.
Old locus tagIKM_02116Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791837.1Sequence record reported by the local genomic context database.
Genomic interval2 065 656-2 066 324 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 065 656-2 067 478 ntGCF_000290695::NZ_JH791837.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290695::NZ_JH791837.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791837.1All displayed genes belong to this local TCS context.
Neighborhood span2 065 656-2 067 478 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 065 656 nt2 067 478 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKM_RS10545GCF_000290695#IKM_RS10545
RRNarLCurrent focus
2 065 656-2 066 324 nt · Reverse (-)
IKM_RS10550GCF_000290695#IKM_RS10550
HKClassic
2 066 321-2 067 478 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS15090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637272
Simplified PFAM architecture for RROC_1637272
PFAM domain coverage: 168 / 222 aa (75.7%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-118] | GerE[160-215]
- Domain count: 2
- Matched identifier: RROC_1637272
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GerE 160-215 ; GerE 160-215
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS15090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290695
AssemblyBaci_cere_VDM022_V1 · Scaffoldhaploid
Genome composition6 312 471 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key