1 HAMP#1
164-226 aa · 63 aa · 13.8% of protein
Raw token
HAMP:164:0.000000000000293:226:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKM_RS10530
Histidine kinase, Classic
Bacillus mycoides · GCF_000290695
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290695#IKM_RS10530Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 455 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-296 aa · 67 aa · 14.7% of protein
Raw token
HisKA:230:0.000000000000236:296:67:643 HATPase_c#3
340-452 aa · 113 aa · 24.8% of protein
Raw token
HATPase_c:340:3.45e-32:452:113:109- Raw architecture: HAMP:164:0.000000000000293:226:63:69#HisKA:230:0.000000000000236:296:67:64#HATPase_c:340:3.45e-32:452:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290695::NZ_JH791837.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2060834-2062872Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKM_02113RefSeq proteinWP_002185295.1
Context group ID
GCF_000290695::NZ_JH791837.1::G00022Context members
IKM_RS10525IKM_RS10530
Partner locus tags
IKM_RS10525IKM_RS10530
Partner old locus tags
IKM_02112IKM_02113
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002185295.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKM_RS10530Primary locus identifier stored in the genes table.
Old locus tagIKM_02113Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791837.1Sequence record reported by the local genomic context database.
Genomic interval2 061 505-2 062 872 nt1 368 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 060 834-2 062 872 ntGCF_000290695::NZ_JH791837.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290695::NZ_JH791837.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791837.1All displayed genes belong to this local TCS context.
Neighborhood span2 060 834-2 062 872 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 060 834 nt2 062 872 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKM_RS10525GCF_000290695#IKM_RS10525
RROmpR
2 060 834-2 061 508 nt · Forward (+)
IKM_RS10530GCF_000290695#IKM_RS10530
HKClassicCurrent focus
2 061 505-2 062 872 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS10530The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1899832
Simplified PFAM architecture for HKOC_1899832
PFAM domain coverage: 225 / 455 aa (49.5%)
1 aa455 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[179-226] | HisKA[230-295] | HATPase_c[341-451]
- Domain count: 3
- Matched identifier: HKOC_1899832
- Positioned domains: HAMP 179-226 ; HisKA 230-295 ; HATPase_c 341-451
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS10530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290695
AssemblyBaci_cere_VDM022_V1 · Scaffoldhaploid
Genome composition6 312 471 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key