1 HisKA#1
85-152 aa · 68 aa · 21.9% of protein
Raw token
HisKA:85:0.000000000000013:152:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKM_RS05125
Histidine kinase, Classic
Bacillus mycoides · GCF_000290695
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290695#IKM_RS05125Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 311 aa (57.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
198-307 aa · 110 aa · 35.4% of protein
Raw token
HATPase_c:198:3.34e-27:307:110:109- Raw architecture: HisKA:85:0.000000000000013:152:68:64#HATPase_c:198:3.34e-27:307:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290695::NZ_JH791837.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1002761-1004390Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKM_01020RefSeq proteinWP_002184875.1
Context group ID
GCF_000290695::NZ_JH791837.1::G00016Context members
IKM_RS05120IKM_RS05125
Partner locus tags
IKM_RS05120IKM_RS05125
Partner old locus tags
IKM_01019IKM_01020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002184875.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7WB05Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7WB05_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKM_RS05125Primary locus identifier stored in the genes table.
Old locus tagIKM_01020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791837.1Sequence record reported by the local genomic context database.
Genomic interval1 003 455-1 004 390 nt936 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 002 761-1 004 390 ntGCF_000290695::NZ_JH791837.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290695::NZ_JH791837.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791837.1All displayed genes belong to this local TCS context.
Neighborhood span1 002 761-1 004 390 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 002 761 nt1 004 390 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKM_RS05120GCF_000290695#IKM_RS05120
RROmpR
1 002 761-1 003 453 nt · Forward (+)
IKM_RS05125GCF_000290695#IKM_RS05125
HKClassicCurrent focus
1 003 455-1 004 390 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS05125The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2876451
Simplified PFAM architecture for HKOC_2876451
PFAM domain coverage: 174 / 311 aa (55.9%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-152] | HATPase_c[201-307]
- Domain count: 2
- Matched identifier: HKOC_2876451
- Positioned domains: HisKA 86-152 ; HATPase_c 201-307
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS05125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290695
AssemblyBaci_cere_VDM022_V1 · Scaffoldhaploid
Genome composition6 312 471 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key