1 Response_reg#1
5-108 aa · 104 aa · 43.7% of protein
Raw token
Response_reg:5:0.00000000000645:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKM_RS00700
Response regulator LytTR family
Bacillus mycoides · GCF_000290695
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290695#IKM_RS00700Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 238 aa (86.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-237 aa · 102 aa · 42.9% of protein
Raw token
LytTR:136:2.37e-30:237:102:98- Raw architecture: Response_reg:5:0.00000000000645:108:106:111#LytTR:136:2.37e-30:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290695::NZ_JH791837.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span146683-147399Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKM_00133RefSeq proteinWP_002089871.1
Context group ID
GCF_000290695::NZ_JH791837.1::G00003Context members
IKM_RS00700
Partner locus tags
IKM_RS00700
Partner old locus tags
IKM_00133
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002089871.1Primary protein accession used for annex mappings.
UniProt accessionA9VTF6Primary UniProt accession resolved in the annex database.
UniProt IDA9VTF6_BACMKDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKM_RS00700Primary locus identifier stored in the genes table.
Old locus tagIKM_00133Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791837.1Sequence record reported by the local genomic context database.
Genomic interval146 683-147 399 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 683-147 399 ntGCF_000290695::NZ_JH791837.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290695::NZ_JH791837.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791837.1All displayed genes belong to this local TCS context.
Neighborhood span146 683-147 399 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 683 nt147 399 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IKM_RS00700GCF_000290695#IKM_RS00700
RRLytTRCurrent focus
146 683-147 399 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS24455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932198
Simplified PFAM architecture for RROC_0932198
PFAM domain coverage: 205 / 238 aa (86.1%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[137-236]
- Domain count: 2
- Matched identifier: RROC_0932198
- Positioned domains: Response_reg 5-109 ; Response_reg 5-109 ; LytTR 137-236 ; LytTR 137-236
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS24455
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 166 total members. Page 1 / 4.
GCF_000003925#BMYCO0001_RS24455 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000290695
AssemblyBaci_cere_VDM022_V1 · Scaffoldhaploid
Genome composition6 312 471 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key