1 Response_reg#1
51-116 aa · 66 aa · 29.1% of protein
Raw token
Response_reg:51:0.00000256:116:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFD32_RS09600
Response regulator LytTR family
Enterococcus faecalis D32 · GCF_000281195
ClassRRTypeLytTRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000281195#EFD32_RS09600Stable P2CS identifier used across views.
GenomeGCF_000281195Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 227 aa (64.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-223 aa · 81 aa · 35.7% of protein
Raw token
LytTR:143:6.25e-17:223:86:98- Raw architecture: Response_reg:51:0.00000256:116:70:111#LytTR:143:6.25e-17:223:86:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000281195::NC_018221.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1918936-1919619Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFD32_1844RefSeq proteinWP_014862240.1
Context group ID
GCF_000281195::NC_018221.1::G00011Context members
EFD32_RS09600
Partner locus tags
EFD32_RS09600
Partner old locus tags
EFD32_1844
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_014862240.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFD32_RS09600Primary locus identifier stored in the genes table.
Old locus tagEFD32_1844Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_018221.1Sequence record reported by the local genomic context database.
Genomic interval1 918 936-1 919 619 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 918 936-1 919 619 ntGCF_000281195::NC_018221.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000281195::NC_018221.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_018221.1All displayed genes belong to this local TCS context.
Neighborhood span1 918 936-1 919 619 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 918 936 nt1 919 619 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EFD32_RS09600GCF_000281195#EFD32_RS09600
RRLytTRCurrent focus
1 918 936-1 919 619 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000281195#EFD32_RS09600The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1355468
Simplified PFAM architecture for RROC_1355468
PFAM domain coverage: 84 / 227 aa (37.0%)
1 aa227 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[142-225]
- Domain count: 1
- Matched identifier: RROC_1355468
- Positioned domains: LytTR 142-225 ; LytTR 142-225
Cluster members and taxonomy
Representative gene: GCF_000281195#EFD32_RS09600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 206 105 · GCF_000281195
AssemblyASM28119v1 · Complete Genomehaploid
Genome composition3 062 505 bp · 37,5% GCEnterococcus faecalis D32
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key