1 Response_reg#1
4-114 aa · 111 aa · 54.4% of protein
Raw token
Response_reg:4:5.33e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECDH1ME8569_RS12225
Response regulator, unclassified
Escherichia coli DH1 · GCF_000270105
ClassRRTypeunclassifiedLength204 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000270105#ECDH1ME8569_RS12225Stable P2CS identifier used across views.
GenomeGCF_000270105Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length204 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 204 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa204 aa
Domain-by-domain annotation2 items
2 GerE#2
142-198 aa · 57 aa · 27.9% of protein
Raw token
GerE:142:3.94e-22:198:57:57- Raw architecture: Response_reg:4:5.33e-34:114:111:111#GerE:142:3.94e-22:198:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000270105::NC_017638.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2468636-2472848Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECDH1ME8569_2308RefSeq proteinWP_000991370.1
Context group ID
GCF_000270105::NC_017638.1::G00021Context members
ECDH1ME8569_RS12225ECDH1ME8569_RS12230
Partner locus tags
ECDH1ME8569_RS12225ECDH1ME8569_RS12230
Partner old locus tags
ECDH1ME8569_2308ECDH1ME8569_2309
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000991370.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0KVS7Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0KVS7_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECDH1ME8569_RS12225Primary locus identifier stored in the genes table.
Old locus tagECDH1ME8569_2308Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017638.1Sequence record reported by the local genomic context database.
Genomic interval2 468 636-2 469 250 nt615 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 468 636-2 472 848 ntGCF_000270105::NC_017638.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000270105::NC_017638.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017638.1All displayed genes belong to this local TCS context.
Neighborhood span2 468 636-2 472 848 nt4 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 468 636 nt2 472 848 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECDH1ME8569_RS12225GCF_000270105#ECDH1ME8569_RS12225
RRunclassifiedCurrent focus
2 468 636-2 469 250 nt · Forward (+)
ECDH1ME8569_RS12230GCF_000270105#ECDH1ME8569_RS12230
HKUnorthodox
2 469 255-2 472 848 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040893565#WMQ18_RS20925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2016061
Simplified PFAM architecture for RROC_2016061
PFAM domain coverage: 168 / 211 aa (79.6%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-114] | GerE[142-198]
- Domain count: 2
- Matched identifier: RROC_2016061
- Positioned domains: Response_reg 4-114 ; GerE 142-198
Cluster members and taxonomy
Representative gene: GCF_040893565#WMQ18_RS20925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 056 · GCF_000270105
AssemblyASM27010v1 · Complete Genomehaploid
Genome composition4 621 430 bp · 51,0% GCEscherichia coli DH1
Signal transduction countsGenes 61 · HK 30 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key