1 Response_reg#1
9-119 aa · 111 aa · 45.3% of protein
Raw token
Response_reg:9:1.43e-37:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBB_RS03140
Response regulator OmpR family
Bifidobacterium bifidum BGN4 · GCF_000265095
ClassRRTypeOmpRLength245 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000265095#BBB_RS03140Stable P2CS identifier used across views.
GenomeGCF_000265095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 245 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-238 aa · 86 aa · 35.1% of protein
Raw token
Trans_reg_C:153:6.3e-28:238:86:77- Raw architecture: Response_reg:9:1.43e-37:119:111:111#Trans_reg_C:153:6.3e-28:238:86:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000265095::NC_017999.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span777668-780365Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBB_0637RefSeq proteinWP_003812530.1
Context group ID
GCF_000265095::NC_017999.1::G00002Context members
BBB_RS03140BBB_RS03145
Partner locus tags
BBB_RS03140BBB_RS03145
Partner old locus tags
BBB_0637BBB_0638
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003812530.1Primary protein accession used for annex mappings.
UniProt accessionA0ABM7EPF8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABM7EPF8_BIFBIDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBB_RS03140Primary locus identifier stored in the genes table.
Old locus tagBBB_0637Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017999.1Sequence record reported by the local genomic context database.
Genomic interval777 668-778 405 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span777 668-780 365 ntGCF_000265095::NC_017999.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000265095::NC_017999.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017999.1All displayed genes belong to this local TCS context.
Neighborhood span777 668-780 365 nt2 698 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
777 668 nt780 365 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBB_RS03140GCF_000265095#BBB_RS03140
RROmpRCurrent focus
777 668-778 405 nt · Forward (+)
BBB_RS03145GCF_000265095#BBB_RS03145
HKClassic
778 602-780 365 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155395#BBNG_RS02775Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789476
Simplified PFAM architecture for RROC_0789476
PFAM domain coverage: 195 / 245 aa (79.6%)
1 aa245 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-119] | Trans_reg_C[154-237]
- Domain count: 2
- Matched identifier: RROC_0789476
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; Trans_reg_C 154-237 ; Trans_reg_C 154-237
Cluster members and taxonomy
Representative gene: GCF_000155395#BBNG_RS02775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 484 020 · GCF_000265095
AssemblyASM26509v1 · Complete Genomehaploid
Genome composition2 223 664 bp · 62,5% GCBifidobacterium bifidum BGN4
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key