1 Response_reg#1
6-121 aa · 116 aa · 53.7% of protein
Raw token
Response_reg:6:6.06e-26:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ESSG_RS05105
Response regulator, unclassified
Escherichia coli H730 · GCF_000261405
ClassRRTypeunclassifiedLength216 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000261405#ESSG_RS05105Stable P2CS identifier used across views.
GenomeGCF_000261405Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length216 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 216 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa216 aa
Domain-by-domain annotation2 items
2 GerE#2
149-205 aa · 57 aa · 26.4% of protein
Raw token
GerE:149:8.56e-19:205:57:57- Raw architecture: Response_reg:6:6.06e-26:121:116:111#GerE:149:8.56e-19:205:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000261405::NZ_JH768586.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span804947-805597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagESSG_03802RefSeq proteinWP_001061917.1
Context group ID
GCF_000261405::NZ_JH768586.1::G00028Context members
ESSG_RS05105
Partner locus tags
ESSG_RS05105
Partner old locus tags
ESSG_03802
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001061917.1Primary protein accession used for annex mappings.
UniProt accessionA0A0F6RFA2Primary UniProt accession resolved in the annex database.
UniProt IDA0A0F6RFA2_CITAMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagESSG_RS05105Primary locus identifier stored in the genes table.
Old locus tagESSG_03802Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH768586.1Sequence record reported by the local genomic context database.
Genomic interval804 947-805 597 nt651 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span804 947-805 597 ntGCF_000261405::NZ_JH768586.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000261405::NZ_JH768586.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH768586.1All displayed genes belong to this local TCS context.
Neighborhood span804 947-805 597 nt651 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
804 947 nt805 597 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ESSG_RS05105GCF_000261405#ESSG_RS05105
RRunclassifiedCurrent focus
804 947-805 597 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1878762
Simplified PFAM architecture for RROC_1878762
PFAM domain coverage: 168 / 216 aa (77.8%)
1 aa216 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-120] | GerE[150-202]
- Domain count: 2
- Matched identifier: RROC_1878762
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; GerE 150-202 ; GerE 150-202
Cluster members and taxonomy
Representative gene: GCF_000005845#b2217
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 656 413 · GCF_000261405
AssemblyEsch_coli_H730_V1 · Scaffoldhaploid
Genome composition5 155 675 bp · 51,0% GCEscherichia coli H730
Signal transduction countsGenes 56 · HK 27 · RR 29CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key