1 HisKA_3#1
211-274 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:211:0.0000000000000225:274:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1313_RS07540
Histidine kinase, Classic
Bifidobacterium longum subsp. longum 1-6B · GCF_000261245
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000261245#HMPREF1313_RS07540Stable P2CS identifier used across views.
GenomeGCF_000261245Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 446 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa446 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
321-439 aa · 119 aa · 26.7% of protein
Raw token
HATPase_c:321:0.000000404:439:120:109- Raw architecture: HisKA_3:211:0.0000000000000225:274:64:68#HATPase_c:321:0.000000404:439:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000261245::NZ_AJTF01000069.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16737-18730Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1313_1628RefSeq proteinWP_007055509.1
Context group ID
GCF_000261245::NZ_AJTF01000069.1::G00006Context members
HMPREF1313_RS07540HMPREF1313_RS07535
Partner locus tags
HMPREF1313_RS07540HMPREF1313_RS07535
Partner old locus tags
HMPREF1313_1628HMPREF1313_1629
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007055509.1Primary protein accession used for annex mappings.
UniProt accessionA0AA87IG13Primary UniProt accession resolved in the annex database.
UniProt IDA0AA87IG13_BIFLLDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1313_RS07540Primary locus identifier stored in the genes table.
Old locus tagHMPREF1313_1628Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AJTF01000069.1Sequence record reported by the local genomic context database.
Genomic interval16 737-18 077 nt1 341 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 737-18 730 ntGCF_000261245::NZ_AJTF01000069.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000261245::NZ_AJTF01000069.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AJTF01000069.1All displayed genes belong to this local TCS context.
Neighborhood span16 737-18 730 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 737 nt18 730 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1313_RS07540GCF_000261245#HMPREF1313_RS07540
HKClassicCurrent focus
16 737-18 077 nt · Forward (+)
HMPREF1313_RS07535GCF_000261245#HMPREF1313_RS07535
RRNarL
18 077-18 730 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000261245#HMPREF1313_RS07540The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2010667
Simplified PFAM architecture for HKOC_2010667
PFAM domain coverage: 66 / 446 aa (14.8%)
1 aa446 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[211-276]
- Domain count: 1
- Matched identifier: HKOC_2010667
- Positioned domains: HisKA_3 211-276
Cluster members and taxonomy
Representative gene: GCF_000261245#HMPREF1313_RS07540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 161 744 · GCF_000261245
AssemblyBlongum16Bv1.0 · Contighaploid
Genome composition2 686 768 bp · 59,5% GCBifidobacterium longum subsp. longum 1-6B
Signal transduction countsGenes 21 · HK 10 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key