1 Response_reg#1
44-130 aa · 87 aa · 54.0% of protein
Raw token
Response_reg:44:0.00000000000004:130:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1315_RS05145
Response regulator, CheY family
Bifidobacterium longum subsp. longum 2-2B · GCF_000261205
ClassRRTypeCheYLength161 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000261205#HMPREF1315_RS05145Stable P2CS identifier used across views.
GenomeGCF_000261205Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length161 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage87 / 161 aa (54.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa161 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:44:0.00000000000004:130:87:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000261205::NZ_AJTJ01000081.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-484Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1315_1873RefSeq proteinWP_007058161.1
Context group ID
GCF_000261205::NZ_AJTJ01000081.1::G00007Context members
HMPREF1315_RS05145
Partner locus tags
HMPREF1315_RS05145
Partner old locus tags
HMPREF1315_1873
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007058161.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3FKK6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3FKK6_BIFLLDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1315_RS05145Primary locus identifier stored in the genes table.
Old locus tagHMPREF1315_1873Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AJTJ01000081.1Sequence record reported by the local genomic context database.
Genomic interval1-484 nt484 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-484 ntGCF_000261205::NZ_AJTJ01000081.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000261205::NZ_AJTJ01000081.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AJTJ01000081.1All displayed genes belong to this local TCS context.
Neighborhood span1-484 nt484 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt484 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1315_RS05145GCF_000261205#HMPREF1315_RS05145
RRCheYCurrent focus
1-484 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015555065#I2E43_RS09055Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0813992
Simplified PFAM architecture for RROC_0813992
PFAM domain coverage: 166 / 244 aa (68.0%)
1 aa244 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[30-142] | GerE[183-235]
- Domain count: 2
- Matched identifier: RROC_0813992
- Positioned domains: Response_reg 30-142 ; GerE 183-235
Cluster members and taxonomy
Representative gene: GCF_015555065#I2E43_RS09055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 161 745 · GCF_000261205
AssemblyBlongum22Bv1.0 · Contighaploid
Genome composition2 625 697 bp · 59,5% GCBifidobacterium longum subsp. longum 2-2B
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key