1 Response_reg#1
5-114 aa · 110 aa · 35.6% of protein
Raw token
Response_reg:5:2.2e-18:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H9401_RS09020
Response regulator, unclassified
Bacillus anthracis str. H9401 · GCF_000258885
ClassRRTypeunclassifiedLength309 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000258885#H9401_RS09020Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length309 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage251 / 309 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa309 aa
Domain-by-domain annotation2 items
2 YcbB#2
158-298 aa · 141 aa · 45.6% of protein
Raw token
YcbB:158:9.58e-64:298:141:131- Raw architecture: Response_reg:5:2.2e-18:114:113:111#YcbB:158:9.58e-64:298:141:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000258885::NC_017729.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1678046-1678975Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH9401_1703RefSeq proteinWP_000500332.1
Context group ID
GCF_000258885::NC_017729.1::G00021Context members
H9401_RS09020
Partner locus tags
H9401_RS09020
Partner old locus tags
H9401_1703
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000500332.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH9401_RS09020Primary locus identifier stored in the genes table.
Old locus tagH9401_1703Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017729.1Sequence record reported by the local genomic context database.
Genomic interval1 678 046-1 678 975 nt930 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 678 046-1 678 975 ntGCF_000258885::NC_017729.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000258885::NC_017729.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017729.1All displayed genes belong to this local TCS context.
Neighborhood span1 678 046-1 678 975 nt930 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 678 046 nt1 678 975 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H9401_RS09020GCF_000258885#H9401_RS09020
RRunclassifiedCurrent focus
1 678 046-1 678 975 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000258885#H9401_RS09020The current gene is the representative for this cluster.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0555110
Simplified PFAM architecture for RROC_0555110
PFAM domain coverage: 249 / 309 aa (80.6%)
1 aa309 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-113] | YcbB[159-298]
- Domain count: 2
- Matched identifier: RROC_0555110
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; YcbB 159-298 ; YcbB 159-298
Cluster members and taxonomy
Representative gene: GCF_000258885#H9401_RS09020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 768 494 · GCF_000258885
AssemblyASM25888v1 · Complete Genomehaploid
Genome composition5 495 471 bp · 35,0% GCBacillus anthracis str. H9401
Signal transduction countsGenes 92 · HK 43 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key