1 Response_reg#1
9-114 aa · 106 aa · 44.7% of protein
Raw token
Response_reg:9:9.69e-29:114:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9945_RS11075
Response regulator OmpR family
Clostridioides difficile 70-100-2010 · GCF_000235905
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000235905#HMPREF9945_RS11075Stable P2CS identifier used across views.
GenomeGCF_000235905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 237 aa (76.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-232 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:157:7.66e-29:232:76:77- Raw architecture: Response_reg:9:9.69e-29:114:107:111#Trans_reg_C:157:7.66e-29:232:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000235905::NZ_JH379261.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10255-10968Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9945_01424RefSeq proteinWP_003436222.1
Context group ID
GCF_000235905::NZ_JH379261.1::G00021Context members
HMPREF9945_RS11075
Partner locus tags
HMPREF9945_RS11075
Partner old locus tags
HMPREF9945_01424
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003436222.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q7WTX6Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q7WTX6_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9945_RS11075Primary locus identifier stored in the genes table.
Old locus tagHMPREF9945_01424Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH379261.1Sequence record reported by the local genomic context database.
Genomic interval10 255-10 968 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 255-10 968 ntGCF_000235905::NZ_JH379261.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000235905::NZ_JH379261.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH379261.1All displayed genes belong to this local TCS context.
Neighborhood span10 255-10 968 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 255 nt10 968 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9945_RS11075GCF_000235905#HMPREF9945_RS11075
RROmpRCurrent focus
10 255-10 968 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155025#UAB_RS0218200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0602931
Simplified PFAM architecture for RROC_0602931
PFAM domain coverage: 185 / 276 aa (67.0%)
1 aa276 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[48-156] | Trans_reg_C[196-271]
- Domain count: 2
- Matched identifier: RROC_0602931
- Positioned domains: Response_reg 48-156 ; Response_reg 48-156 ; Trans_reg_C 196-271 ; Trans_reg_C 196-271
Cluster members and taxonomy
Representative gene: GCF_000155025#UAB_RS0218200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 002 369 · GCF_000235905
AssemblyASM23590v1 · Scaffoldhaploid
Genome composition4 008 217 bp · 28,5% GCClostridioides difficile 70-100-2010
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key