1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:1.85e-33:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9945_RS09130
Response regulator OmpR family
Clostridioides difficile 70-100-2010 · GCF_000235905
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000235905#HMPREF9945_RS09130Stable P2CS identifier used across views.
GenomeGCF_000235905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:7.01e-30:226:77:77- Raw architecture: Response_reg:4:1.85e-33:112:110:111#Trans_reg_C:150:7.01e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000235905::NZ_JH379275.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span153618-155242Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9945_01831RefSeq proteinWP_021368943.1
Context group ID
GCF_000235905::NZ_JH379275.1::G00026Context members
HMPREF9945_RS09135HMPREF9945_RS09130
Partner locus tags
HMPREF9945_RS09135HMPREF9945_RS09130
Partner old locus tags
HMPREF9945_01830HMPREF9945_01831
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021368943.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3BAP6Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3BAP6_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9945_RS09130Primary locus identifier stored in the genes table.
Old locus tagHMPREF9945_01831Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH379275.1Sequence record reported by the local genomic context database.
Genomic interval154 550-155 242 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span153 618-155 242 ntGCF_000235905::NZ_JH379275.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000235905::NZ_JH379275.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH379275.1All displayed genes belong to this local TCS context.
Neighborhood span153 618-155 242 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 618 nt155 242 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9945_RS09135GCF_000235905#HMPREF9945_RS09135
HKClassic
153 618-154 553 nt · Reverse (-)
HMPREF9945_RS09130GCF_000235905#HMPREF9945_RS09130
RROmpRCurrent focus
154 550-155 242 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS09130The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200791
Simplified PFAM architecture for RROC_1200791
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1200791
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS09130
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 190 total members. Page 1 / 4.
GCF_000235905#HMPREF9945_RS09130 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 002 369 · GCF_000235905
AssemblyASM23590v1 · Scaffoldhaploid
Genome composition4 008 217 bp · 28,5% GCClostridioides difficile 70-100-2010
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key