1 Response_reg#1
5-116 aa · 112 aa · 93.3% of protein
Raw token
Response_reg:5:2.62e-33:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9945_RS05190
Response regulator, CheY family
Clostridioides difficile 70-100-2010 · GCF_000235905
ClassRRTypeCheYLength120 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000235905#HMPREF9945_RS05190Stable P2CS identifier used across views.
GenomeGCF_000235905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length120 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 120 aa (93.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa120 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:2.62e-33:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000235905::NZ_JH379312.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span40495-40857Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9945_02655RefSeq proteinWP_003439098.1
Context group ID
GCF_000235905::NZ_JH379312.1::G00037Context members
HMPREF9945_RS05190
Partner locus tags
HMPREF9945_RS05190
Partner old locus tags
HMPREF9945_02655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003439098.1Primary protein accession used for annex mappings.
UniProt accessionQ188X9Primary UniProt accession resolved in the annex database.
UniProt IDQ188X9_CLOD6Display identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9945_RS05190Primary locus identifier stored in the genes table.
Old locus tagHMPREF9945_02655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH379312.1Sequence record reported by the local genomic context database.
Genomic interval40 495-40 857 nt363 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 495-40 857 ntGCF_000235905::NZ_JH379312.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000235905::NZ_JH379312.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH379312.1All displayed genes belong to this local TCS context.
Neighborhood span40 495-40 857 nt363 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 495 nt40 857 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9945_RS05190GCF_000235905#HMPREF9945_RS05190
RRCheYCurrent focus
40 495-40 857 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS03235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2434070
Simplified PFAM architecture for RROC_2434070
PFAM domain coverage: 111 / 120 aa (92.5%)
1 aa120 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2434070
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS03235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 002 369 · GCF_000235905
AssemblyASM23590v1 · Scaffoldhaploid
Genome composition4 008 217 bp · 28,5% GCClostridioides difficile 70-100-2010
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key