1 HisKA#1
558-624 aa · 67 aa · 8.6% of protein
Raw token
HisKA:558:1.66e-18:624:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9945_RS00765
Histidine kinase, Classic
Clostridioides difficile 70-100-2010 · GCF_000235905
ClassHKTypeClassicLength778 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000235905#HMPREF9945_RS00765Stable P2CS identifier used across views.
GenomeGCF_000235905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length778 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 778 aa (22.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa778 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
671-775 aa · 105 aa · 13.5% of protein
Raw token
HATPase_c:671:0.000000000412:775:110:109- Raw architecture: HisKA:558:1.66e-18:624:67:64#HATPase_c:671:0.000000000412:775:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000235905::NZ_JH379329.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span365009-368033Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9945_03595RefSeq proteinWP_004454886.1
Context group ID
GCF_000235905::NZ_JH379329.1::G00055Context members
HMPREF9945_RS00765HMPREF9945_RS00760
Partner locus tags
HMPREF9945_RS00765HMPREF9945_RS00760
Partner old locus tags
HMPREF9945_03595HMPREF9945_03596
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004454886.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3G2W6Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3G2W6_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9945_RS00765Primary locus identifier stored in the genes table.
Old locus tagHMPREF9945_03595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH379329.1Sequence record reported by the local genomic context database.
Genomic interval365 009-367 345 nt2 337 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span365 009-368 033 ntGCF_000235905::NZ_JH379329.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000235905::NZ_JH379329.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH379329.1All displayed genes belong to this local TCS context.
Neighborhood span365 009-368 033 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
365 009 nt368 033 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9945_RS00765GCF_000235905#HMPREF9945_RS00765
HKClassicCurrent focus
365 009-367 345 nt · Reverse (-)
HMPREF9945_RS00760GCF_000235905#HMPREF9945_RS00760
RROmpR
367 317-368 033 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS00765The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0598913
Simplified PFAM architecture for HKOC_0598913
PFAM domain coverage: 172 / 778 aa (22.1%)
1 aa778 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-624] | HATPase_c[671-775]
- Domain count: 2
- Matched identifier: HKOC_0598913
- Positioned domains: HisKA 558-624 ; HATPase_c 671-775
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS00765
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 174 total members. Page 1 / 4.
GCF_000235905#HMPREF9945_RS00765 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 002 369 · GCF_000235905
AssemblyASM23590v1 · Scaffoldhaploid
Genome composition4 008 217 bp · 28,5% GCClostridioides difficile 70-100-2010
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key