1 HisKA#1
82-144 aa · 63 aa · 20.9% of protein
Raw token
HisKA:82:0.0000000761:144:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1122_RS07645
Histidine kinase, Classic
Clostridioides difficile 002-P50-2011 · GCF_000235825
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000235825#HMPREF1122_RS07645Stable P2CS identifier used across views.
GenomeGCF_000235825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 302 aa (54.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-295 aa · 100 aa · 33.1% of protein
Raw token
HATPase_c:196:1.92e-22:295:100:109- Raw architecture: HisKA:82:0.0000000761:144:63:64#HATPase_c:196:1.92e-22:295:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000235825::NZ_JH379552.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115384-116965Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1122_02249RefSeq proteinWP_003428750.1
Context group ID
GCF_000235825::NZ_JH379552.1::G00035Context members
HMPREF1122_RS07645HMPREF1122_RS07640
Partner locus tags
HMPREF1122_RS07645HMPREF1122_RS07640
Partner old locus tags
HMPREF1122_02249HMPREF1122_02250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003428750.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3TX09Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3TX09_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1122_RS07645Primary locus identifier stored in the genes table.
Old locus tagHMPREF1122_02249Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH379552.1Sequence record reported by the local genomic context database.
Genomic interval115 384-116 292 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 384-116 965 ntGCF_000235825::NZ_JH379552.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000235825::NZ_JH379552.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH379552.1All displayed genes belong to this local TCS context.
Neighborhood span115 384-116 965 nt1 582 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 384 nt116 965 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1122_RS07645GCF_000235825#HMPREF1122_RS07645
HKClassicCurrent focus
115 384-116 292 nt · Reverse (-)
HMPREF1122_RS07640GCF_000235825#HMPREF1122_RS07640
RROmpR
116 294-116 965 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS10095Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884684
Simplified PFAM architecture for HKOC_2884684
PFAM domain coverage: 165 / 302 aa (54.6%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[82-144] | HATPase_c[195-296]
- Domain count: 2
- Matched identifier: HKOC_2884684
- Positioned domains: HisKA 82-144 ; HATPase_c 195-296
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS10095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 997 827 · GCF_000235825
AssemblyASM23582v1 · Scaffoldhaploid
Genome composition4 103 061 bp · 28,5% GCClostridioides difficile 002-P50-2011
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key