1 Response_reg#1
15-122 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:15:7.83e-35:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9228_RS05380
Response regulator OmpR family
Bifidobacterium breve ACS-071-V-Sch8b · GCF_000213865
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000213865#HMPREF9228_RS05380Stable P2CS identifier used across views.
GenomeGCF_000213865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 240 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 30.0% of protein
Raw token
Trans_reg_C:164:1.01e-30:235:77:77- Raw architecture: Response_reg:15:7.83e-35:122:109:111#Trans_reg_C:164:1.01e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000213865::NC_017218.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1273302-1275097Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9228_1113RefSeq proteinWP_014483890.1
Context group ID
GCF_000213865::NC_017218.1::G00011Context members
HMPREF9228_RS05380HMPREF9228_RS05385
Partner locus tags
HMPREF9228_RS05380HMPREF9228_RS05385
Partner old locus tags
HMPREF9228_1113HMPREF9228_1114
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_014483890.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9228_RS05380Primary locus identifier stored in the genes table.
Old locus tagHMPREF9228_1113Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017218.1Sequence record reported by the local genomic context database.
Genomic interval1 273 302-1 274 024 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 273 302-1 275 097 ntGCF_000213865::NC_017218.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000213865::NC_017218.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017218.1All displayed genes belong to this local TCS context.
Neighborhood span1 273 302-1 275 097 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 273 302 nt1 275 097 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9228_RS05380GCF_000213865#HMPREF9228_RS05380
RROmpRCurrent focus
1 273 302-1 274 024 nt · Forward (+)
HMPREF9228_RS05385GCF_000213865#HMPREF9228_RS05385
HKClassic
1 274 024-1 275 097 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000213865#HMPREF9228_RS05380The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882454
Simplified PFAM architecture for RROC_0882454
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0882454
- Positioned domains: Response_reg 15-122 ; Response_reg 15-122 ; Trans_reg_C 164-235 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_000213865#HMPREF9228_RS05380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 866 777 · GCF_000213865
AssemblyASM21386v1 · Complete Genomehaploid
Genome composition2 327 492 bp · 58,5% GCBifidobacterium breve ACS-071-V-Sch8b
Signal transduction countsGenes 26 · HK 10 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key