1 HisKA_3#1
247-309 aa · 63 aa · 7.6% of protein
Raw token
HisKA_3:247:6.65e-16:309:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9228_RS05000
Histidine kinase, Classic
Bifidobacterium breve ACS-071-V-Sch8b · GCF_000213865
ClassHKTypeClassicLength824 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000213865#HMPREF9228_RS05000Stable P2CS identifier used across views.
GenomeGCF_000213865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length824 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 824 aa (27.4%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa824 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
350-441 aa · 92 aa · 11.2% of protein
Raw token
HATPase_c:350:0.00000000000099:441:108:1093 HisKA_3#3
700-770 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:700:0.0000105:770:71:68- Raw architecture: HisKA_3:247:6.65e-16:309:63:68#HATPase_c:350:0.00000000000099:441:108:109#HisKA_3:700:0.0000105:770:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000213865::NC_017218.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1186499-1189795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9228_1038RefSeq proteinWP_080560860.1
Context group ID
GCF_000213865::NC_017218.1::G00009Context members
HMPREF9228_RS05000HMPREF9228_RS05005
Partner locus tags
HMPREF9228_RS05000HMPREF9228_RS05005
Partner old locus tags
HMPREF9228_1038HMPREF9228_1039
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080560860.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9228_RS05000Primary locus identifier stored in the genes table.
Old locus tagHMPREF9228_1038Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017218.1Sequence record reported by the local genomic context database.
Genomic interval1 186 499-1 188 967 nt2 469 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 186 499-1 189 795 ntGCF_000213865::NC_017218.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000213865::NC_017218.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017218.1All displayed genes belong to this local TCS context.
Neighborhood span1 186 499-1 189 795 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 186 499 nt1 189 795 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9228_RS05000GCF_000213865#HMPREF9228_RS05000
HKClassicCurrent focus
1 186 499-1 188 967 nt · Forward (+)
HMPREF9228_RS05005GCF_000213865#HMPREF9228_RS05005
RRNarL
1 188 989-1 189 795 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000213865#HMPREF9228_RS05000The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0525671
Simplified PFAM architecture for HKOC_0525671
PFAM domain coverage: 416 / 824 aa (50.5%)
1 aa824 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-145] | HisKA_3[247-310] | HATPase_c[350-440] | DUF7134[488-618]
- Domain count: 4
- Matched identifier: HKOC_0525671
- Positioned domains: DUF7134 16-145 ; HisKA_3 247-310 ; HATPase_c 350-440 ; DUF7134 488-618
Cluster members and taxonomy
Representative gene: GCF_000213865#HMPREF9228_RS05000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 866 777 · GCF_000213865
AssemblyASM21386v1 · Complete Genomehaploid
Genome composition2 327 492 bp · 58,5% GCBifidobacterium breve ACS-071-V-Sch8b
Signal transduction countsGenes 26 · HK 10 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key