1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000911:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDBI1_RS16435
Histidine kinase, Classic
Clostridioides difficile BI1 · GCF_000211235
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_000211235#CDBI1_RS16435Stable P2CS identifier used across views.
GenomeGCF_000211235Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 671 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-668 aa · 104 aa · 15.5% of protein
Raw token
HATPase_c:565:2.91e-30:668:104:109- Raw architecture: HisKA:449:0.00000000911:514:66:64#HATPase_c:565:2.91e-30:668:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_000211235::NC_017179.1::G00053
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3657488-3663213Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDBI1_16010RefSeq proteinWP_009893921.1
Context group ID
GCF_000211235::NC_017179.1::G00053Context members
CDBI1_RS16420CDBI1_RS16425CDBI1_RS16430CDBI1_RS16435CDBI1_RS16440
Partner locus tags
CDBI1_RS16420CDBI1_RS16425CDBI1_RS16430CDBI1_RS16435CDBI1_RS16440
Partner old locus tags
CDBI1_15995CDBI1_16000CDBI1_16005CDBI1_16010CDBI1_16015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009893921.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3NB90Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3NB90_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDBI1_RS16435Primary locus identifier stored in the genes table.
Old locus tagCDBI1_16010Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017179.1Sequence record reported by the local genomic context database.
Genomic interval3 660 449-3 662 464 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 657 488-3 663 213 ntGCF_000211235::NC_017179.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000211235::NC_017179.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017179.1All displayed genes belong to this local TCS context.
Neighborhood span3 657 488-3 663 213 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 657 488 nt3 663 213 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
CDBI1_RS16420GCF_000211235#CDBI1_RS16420
HKClassic
3 657 488-3 658 603 nt · Reverse (-)
CDBI1_RS16425GCF_000211235#CDBI1_RS16425
RROmpR
3 658 639-3 659 337 nt · Reverse (-)
CDBI1_RS16430GCF_000211235#CDBI1_RS16430
RROmpR
3 659 719-3 660 399 nt · Reverse (-)
CDBI1_RS16435GCF_000211235#CDBI1_RS16435
HKClassicCurrent focus
3 660 449-3 662 464 nt · Reverse (-)
CDBI1_RS16440GCF_000211235#CDBI1_RS16440
RROmpR
3 662 536-3 663 213 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216530Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842418
Simplified PFAM architecture for HKOC_0842418
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842418
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 699 034 · GCF_000211235
AssemblyASM21123v1 · Complete Genomehaploid
Genome composition4 464 700 bp · 28,5% GCClostridioides difficile BI1
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key