1 HisKA#1
558-624 aa · 67 aa · 8.6% of protein
Raw token
HisKA:558:1.46e-18:624:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDBI1_RS12925
Histidine kinase, Classic
Clostridioides difficile BI1 · GCF_000211235
ClassHKTypeClassicLength778 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000211235#CDBI1_RS12925Stable P2CS identifier used across views.
GenomeGCF_000211235Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length778 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 778 aa (22.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
671-775 aa · 105 aa · 13.5% of protein
Raw token
HATPase_c:671:0.000000000415:775:110:109- Raw architecture: HisKA:558:1.46e-18:624:67:64#HATPase_c:671:0.000000000415:775:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000211235::NC_017179.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2807890-2810914Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDBI1_12485RefSeq proteinWP_012816303.1
Context group ID
GCF_000211235::NC_017179.1::G00041Context members
CDBI1_RS12925CDBI1_RS12930
Partner locus tags
CDBI1_RS12925CDBI1_RS12930
Partner old locus tags
CDBI1_12485CDBI1_12490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012816303.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N5Q0Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N5Q0_CLODCDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDBI1_RS12925Primary locus identifier stored in the genes table.
Old locus tagCDBI1_12485Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017179.1Sequence record reported by the local genomic context database.
Genomic interval2 807 890-2 810 226 nt2 337 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 807 890-2 810 914 ntGCF_000211235::NC_017179.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000211235::NC_017179.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017179.1All displayed genes belong to this local TCS context.
Neighborhood span2 807 890-2 810 914 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 807 890 nt2 810 914 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDBI1_RS12925GCF_000211235#CDBI1_RS12925
HKClassicCurrent focus
2 807 890-2 810 226 nt · Reverse (-)
CDBI1_RS12930GCF_000211235#CDBI1_RS12930
RROmpR
2 810 198-2 810 914 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0212970Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0598797
Simplified PFAM architecture for HKOC_0598797
PFAM domain coverage: 172 / 778 aa (22.1%)
1 aa778 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-624] | HATPase_c[671-775]
- Domain count: 2
- Matched identifier: HKOC_0598797
- Positioned domains: HisKA 558-624 ; HATPase_c 671-775
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0212970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 699 034 · GCF_000211235
AssemblyASM21123v1 · Complete Genomehaploid
Genome composition4 464 700 bp · 28,5% GCClostridioides difficile BI1
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key