1 Response_reg#1
4-114 aa · 111 aa · 45.3% of protein
Raw token
Response_reg:4:1.79e-23:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDBI1_RS02280
Response regulator LytTR family
Clostridioides difficile BI1 · GCF_000211235
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000211235#CDBI1_RS02280Stable P2CS identifier used across views.
GenomeGCF_000211235Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 245 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-220 aa · 79 aa · 32.2% of protein
Raw token
LytTR:142:0.0000000000000523:220:80:98- Raw architecture: Response_reg:4:1.79e-23:114:113:111#LytTR:142:0.0000000000000523:220:80:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000211235::NC_017179.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span425054-425791Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDBI1_01830RefSeq proteinWP_009888197.1
Context group ID
GCF_000211235::NC_017179.1::G00003Context members
CDBI1_RS02280
Partner locus tags
CDBI1_RS02280
Partner old locus tags
CDBI1_01830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009888197.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N3N8Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N3N8_CLODCDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDBI1_RS02280Primary locus identifier stored in the genes table.
Old locus tagCDBI1_01830Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017179.1Sequence record reported by the local genomic context database.
Genomic interval425 054-425 791 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span425 054-425 791 ntGCF_000211235::NC_017179.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000211235::NC_017179.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017179.1All displayed genes belong to this local TCS context.
Neighborhood span425 054-425 791 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
425 054 nt425 791 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDBI1_RS02280GCF_000211235#CDBI1_RS02280
RRLytTRCurrent focus
425 054-425 791 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789273
Simplified PFAM architecture for RROC_0789273
PFAM domain coverage: 202 / 245 aa (82.4%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[143-234]
- Domain count: 2
- Matched identifier: RROC_0789273
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 143-234 ; LytTR 143-234
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202110
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 354 total members. Page 1 / 8.
GCF_000003215#QAC_RS0202110 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 699 034 · GCF_000211235
AssemblyASM21123v1 · Complete Genomehaploid
Genome composition4 464 700 bp · 28,5% GCClostridioides difficile BI1
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key