1 Response_reg#1
25-136 aa · 112 aa · 47.7% of protein
Raw token
Response_reg:25:8.71e-28:136:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIL_RS03755
Response regulator NarL family
Bifidobacterium longum subsp. longum F8 · GCF_000210755
ClassRRTypeNarLLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210755#BIL_RS03755Stable P2CS identifier used across views.
GenomeGCF_000210755Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 235 aa (71.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
170-226 aa · 57 aa · 24.3% of protein
Raw token
HTH_LUXR:170:0.00000000000000291:226:58:58- Raw architecture: Response_reg:25:8.71e-28:136:112:111#HTH_LUXR:170:0.00000000000000291:226:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210755::NC_021008.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span925452-927426Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210755::NC_021008.1::G00004Context members
BIL_RS03755BIL_RS03760
Partner locus tags
BIL_RS03755BIL_RS03760
Partner old locus tags
BIL_07680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044580622.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIL_RS03755Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021008.1Sequence record reported by the local genomic context database.
Genomic interval925 452-926 159 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span925 452-927 426 ntGCF_000210755::NC_021008.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210755::NC_021008.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021008.1All displayed genes belong to this local TCS context.
Neighborhood span925 452-927 426 nt1 975 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
925 452 nt927 426 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BIL_RS03755GCF_000210755#BIL_RS03755
RRNarLCurrent focus
925 452-926 159 nt · Reverse (-)
BIL_RS03760GCF_000210755#BIL_RS03760
HKClassic
926 194-927 426 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210755#BIL_RS03755The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1017063
Simplified PFAM architecture for RROC_1017063
PFAM domain coverage: 162 / 235 aa (68.9%)
1 aa235 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[23-136] | GerE[175-222]
- Domain count: 2
- Matched identifier: RROC_1017063
- Positioned domains: Response_reg 23-136 ; Response_reg 23-136 ; GerE 175-222 ; GerE 175-222
Cluster members and taxonomy
Representative gene: GCF_000210755#BIL_RS03755
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_000210755#BIL_RS03755 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 722 911 · GCF_000210755
AssemblyASM21075v1 · Chromosomehaploid
Genome composition2 384 987 bp · 60,0% GCBifidobacterium longum subsp. longum F8
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key