1 HAMP#1
3-69 aa · 67 aa · 22.0% of protein
Raw token
HAMP:3:2.28e-16:69:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CL2_RS00200
Histidine kinase, Classic
Anaerostipes hadrus · GCF_000210695
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210695#CL2_RS00200Stable P2CS identifier used across views.
GenomeGCF_000210695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage227 / 305 aa (74.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
81-133 aa · 53 aa · 17.4% of protein
Raw token
HisKA:81:0.000000000309:133:53:643 HATPase_c#3
190-296 aa · 107 aa · 35.1% of protein
Raw token
HATPase_c:190:1.94e-30:296:107:109- Raw architecture: HAMP:3:2.28e-16:69:67:69#HisKA:81:0.000000000309:133:53:64#HATPase_c:190:1.94e-30:296:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210695::NC_021016.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span33828-34746Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210695::NC_021016.1::G00002Context members
CL2_RS00200
Partner locus tags
CL2_RS00200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_208896439.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCL2_RS00200Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021016.1Sequence record reported by the local genomic context database.
Genomic interval33 828-34 746 nt919 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 828-34 746 ntGCF_000210695::NC_021016.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210695::NC_021016.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021016.1All displayed genes belong to this local TCS context.
Neighborhood span33 828-34 746 nt919 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 828 nt34 746 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CL2_RS00200GCF_000210695#CL2_RS00200
HKClassicCurrent focus
33 828-34 746 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS00670Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1664672
Simplified PFAM architecture for HKOC_1664672
PFAM domain coverage: 212 / 475 aa (44.6%)
1 aa475 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[187-238] | HisKA[251-303] | HATPase_c[360-466]
- Domain count: 3
- Matched identifier: HKOC_1664672
- Positioned domains: HAMP 187-238 ; HisKA 251-303 ; HATPase_c 360-466
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS00670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_000210695
AssemblyASM21069v1 · Chromosomehaploid
Genome composition3 114 788 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key