1 Response_reg#1
4-113 aa · 110 aa · 86.6% of protein
Raw token
Response_reg:4:1.25e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDCF5_RS19530
Response regulator, CheY family
Clostridioides difficile CF5 · GCF_000210415
ClassRRTypeCheYLength127 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210415#CDCF5_RS19530Stable P2CS identifier used across views.
GenomeGCF_000210415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length127 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 127 aa (86.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa127 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.25e-33:113:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210415::NC_017173.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3665852-3667649Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210415::NC_017173.1::G00051Context members
CDCF5_RS16560CDCF5_RS19530
Partner locus tags
CDCF5_RS16560CDCF5_RS19530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330365490.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDCF5_RS19530Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_017173.1Sequence record reported by the local genomic context database.
Genomic interval3 667 266-3 667 649 nt384 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 665 852-3 667 649 ntGCF_000210415::NC_017173.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210415::NC_017173.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017173.1All displayed genes belong to this local TCS context.
Neighborhood span3 665 852-3 667 649 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 665 852 nt3 667 649 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDCF5_RS16560GCF_000210415#CDCF5_RS16560
HKClassic
3 665 852-3 666 982 nt · Reverse (-)
CDCF5_RS19530GCF_000210415#CDCF5_RS19530
RRCheYCurrent focus
3 667 266-3 667 649 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210415#CDCF5_RS19530The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2350481
Simplified PFAM architecture for RROC_2350481
PFAM domain coverage: 109 / 127 aa (85.8%)
1 aa127 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-112]
- Domain count: 1
- Matched identifier: RROC_2350481
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112
Cluster members and taxonomy
Representative gene: GCF_000210415#CDCF5_RS19530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 699 036 · GCF_000210415
AssemblyASM21041v1 · Complete Genomehaploid
Genome composition4 159 517 bp · 28,5% GCClostridioides difficile CF5
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key