1 HisKA#1
46-93 aa · 48 aa · 18.7% of protein
Raw token
HisKA:46:0.000000642:93:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDCF5_RS15015
Histidine kinase, Classic
Clostridioides difficile CF5 · GCF_000210415
ClassHKTypeClassicLength257 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210415#CDCF5_RS15015Stable P2CS identifier used across views.
GenomeGCF_000210415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 257 aa (61.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
139-247 aa · 109 aa · 42.4% of protein
Raw token
HATPase_c:139:1.52e-22:247:109:109- Raw architecture: HisKA:46:0.000000642:93:53:64#HATPase_c:139:1.52e-22:247:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210415::NC_017173.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3311643-3313349Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210415::NC_017173.1::G00048Context members
CDCF5_RS15015CDCF5_RS15020
Partner locus tags
CDCF5_RS15015CDCF5_RS15020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330361357.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDCF5_RS15015Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_017173.1Sequence record reported by the local genomic context database.
Genomic interval3 311 643-3 312 416 nt774 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 311 643-3 313 349 ntGCF_000210415::NC_017173.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210415::NC_017173.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017173.1All displayed genes belong to this local TCS context.
Neighborhood span3 311 643-3 313 349 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 311 643 nt3 313 349 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDCF5_RS15015GCF_000210415#CDCF5_RS15015
HKClassicCurrent focus
3 311 643-3 312 416 nt · Reverse (-)
CDCF5_RS15020GCF_000210415#CDCF5_RS15020
RROmpR
3 312 657-3 313 349 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210415#CDCF5_RS15015The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2916050
Simplified PFAM architecture for HKOC_2916050
PFAM domain coverage: 109 / 257 aa (42.4%)
1 aa257 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[140-248]
- Domain count: 1
- Matched identifier: HKOC_2916050
- Positioned domains: HATPase_c 140-248
Cluster members and taxonomy
Representative gene: GCF_000210415#CDCF5_RS15015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 699 036 · GCF_000210415
AssemblyASM21041v1 · Complete Genomehaploid
Genome composition4 159 517 bp · 28,5% GCClostridioides difficile CF5
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key