1 Response_reg#1
4-113 aa · 110 aa · 43.0% of protein
Raw token
Response_reg:4:3.89e-29:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDM68_RS13410
Response regulator LytTR family
Clostridioides difficile M68 · GCF_000210395
ClassRRTypeLytTRLength256 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210395#CDM68_RS13410Stable P2CS identifier used across views.
GenomeGCF_000210395Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 256 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 LytTR#2
157-254 aa · 98 aa · 38.3% of protein
Raw token
LytTR:157:9.91e-31:254:98:98- Raw architecture: Response_reg:4:3.89e-29:113:112:111#LytTR:157:9.91e-31:254:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210395::NC_017175.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2883393-2885370Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210395::NC_017175.1::G00043Context members
CDM68_RS13410CDM68_RS13415
Partner locus tags
CDM68_RS13410CDM68_RS13415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003426901.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3TXS5Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3TXS5_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDM68_RS13410Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_017175.1Sequence record reported by the local genomic context database.
Genomic interval2 883 393-2 884 163 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 883 393-2 885 370 ntGCF_000210395::NC_017175.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210395::NC_017175.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017175.1All displayed genes belong to this local TCS context.
Neighborhood span2 883 393-2 885 370 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 883 393 nt2 885 370 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDM68_RS13410GCF_000210395#CDM68_RS13410
RRLytTRCurrent focus
2 883 393-2 884 163 nt · Reverse (-)
CDM68_RS13415GCF_000210395#CDM68_RS13415
HKClassic
2 884 168-2 885 370 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS13410The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0673208
Simplified PFAM architecture for RROC_0673208
PFAM domain coverage: 206 / 256 aa (80.5%)
1 aa256 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[157-253]
- Domain count: 2
- Matched identifier: RROC_0673208
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 157-253 ; LytTR 157-253
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS13410
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 296 total members. Page 1 / 6.
GCF_000210395#CDM68_RS13410 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 699 037 · GCF_000210395
AssemblyASM21039v1 · Chromosomehaploid
Genome composition4 308 325 bp · 29,0% GCClostridioides difficile M68
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key