1 Response_reg#1
9-120 aa · 112 aa · 35.1% of protein
Raw token
Response_reg:9:1.14e-28:120:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDM68_RS02880
Response regulator, PleD family
Clostridioides difficile M68 · GCF_000210395
ClassRRTypePleDLength319 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210395#CDM68_RS02880Stable P2CS identifier used across views.
GenomeGCF_000210395Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length319 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage267 / 319 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 GGDEF#2
153-307 aa · 155 aa · 48.6% of protein
Raw token
GGDEF:153:1.2e-47:307:158:160- Raw architecture: Response_reg:9:1.14e-28:120:112:111#GGDEF:153:1.2e-47:307:158:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210395::NC_017175.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span565265-566224Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210395::NC_017175.1::G00009Context members
CDM68_RS02880
Partner locus tags
CDM68_RS02880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021387586.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3YTV2Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3YTV2_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDM68_RS02880Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_017175.1Sequence record reported by the local genomic context database.
Genomic interval565 265-566 224 nt960 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span565 265-566 224 ntGCF_000210395::NC_017175.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210395::NC_017175.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017175.1All displayed genes belong to this local TCS context.
Neighborhood span565 265-566 224 nt960 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
565 265 nt566 224 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDM68_RS02880GCF_000210395#CDM68_RS02880
RRPleDCurrent focus
565 265-566 224 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS02880The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0533547
Simplified PFAM architecture for RROC_0533547
PFAM domain coverage: 266 / 319 aa (83.4%)
1 aa319 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[9-120] | GGDEF[153-306]
- Domain count: 2
- Matched identifier: RROC_0533547
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120 ; GGDEF 153-306 ; GGDEF 153-306
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS02880
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 334 total members. Page 1 / 7.
GCF_000210395#CDM68_RS02880 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 699 037 · GCF_000210395
AssemblyASM21039v1 · Chromosomehaploid
Genome composition4 308 325 bp · 29,0% GCClostridioides difficile M68
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key