1 Response_reg#1
5-117 aa · 113 aa · 49.3% of protein
Raw token
Response_reg:5:4.55e-37:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECB41_RS05080
Response regulator OmpR family
Escherichia coli B41 · GCF_000194705
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000194705#ECB41_RS05080Stable P2CS identifier used across views.
GenomeGCF_000194705Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:151:1.65e-35:225:76:77- Raw architecture: Response_reg:5:4.55e-37:117:113:111#Trans_reg_C:151:1.65e-35:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000194705::NZ_AFAH02000004.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span332222-334264Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECB41_0490RefSeq proteinWP_000113933.1
Context group ID
GCF_000194705::NZ_AFAH02000004.1::G00009Context members
ECB41_RS05080ECB41_RS05075
Partner locus tags
ECB41_RS05080ECB41_RS05075
Partner old locus tags
ECB41_0490ECB41_0491
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000113933.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FS99Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FS99_ECOLXDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECB41_RS05080Primary locus identifier stored in the genes table.
Old locus tagECB41_0490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AFAH02000004.1Sequence record reported by the local genomic context database.
Genomic interval332 222-332 911 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span332 222-334 264 ntGCF_000194705::NZ_AFAH02000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000194705::NZ_AFAH02000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AFAH02000004.1All displayed genes belong to this local TCS context.
Neighborhood span332 222-334 264 nt2 043 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
332 222 nt334 264 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECB41_RS05080GCF_000194705#ECB41_RS05080
RROmpRCurrent focus
332 222-332 911 nt · Forward (+)
ECB41_RS05075GCF_000194705#ECB41_RS05075
HKClassic
332 969-334 264 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246102
Simplified PFAM architecture for RROC_1246102
PFAM domain coverage: 188 / 229 aa (82.1%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-117] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1246102
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_000005845#b0399
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 869 694 · GCF_000194705
AssemblyASM19470v2 · Contighaploid
Genome composition5 011 605 bp · 50,5% GCEscherichia coli B41
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key