1 HAMP#1
200-263 aa · 64 aa · 12.8% of protein
Raw token
HAMP:200:0.0000000000347:263:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CT43_RS01455
Histidine kinase, Classic
Bacillus thuringiensis serovar chinensis CT-43 · GCF_000193355
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000193355#CT43_RS01455Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 501 aa (47.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
276-343 aa · 68 aa · 13.6% of protein
Raw token
HisKA:276:0.00000000000000128:343:68:643 HATPase_c#3
390-497 aa · 108 aa · 21.6% of protein
Raw token
HATPase_c:390:4.5e-23:497:109:109- Raw architecture: HAMP:200:0.0000000000347:263:64:69#HisKA:276:0.00000000000000128:343:68:64#HATPase_c:390:4.5e-23:497:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000193355::NC_017208.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span268564-270754Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCT43_CH0248RefSeq proteinWP_000719239.1
Context group ID
GCF_000193355::NC_017208.1::G00001Context members
CT43_RS01450CT43_RS01455
Partner locus tags
CT43_RS01450CT43_RS01455
Partner old locus tags
CT43_CH0247CT43_CH0248
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000719239.1Primary protein accession used for annex mappings.
UniProt accessionA0A1B1KZC7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1B1KZC7_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCT43_RS01455Primary locus identifier stored in the genes table.
Old locus tagCT43_CH0248Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017208.1Sequence record reported by the local genomic context database.
Genomic interval269 249-270 754 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span268 564-270 754 ntGCF_000193355::NC_017208.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000193355::NC_017208.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017208.1All displayed genes belong to this local TCS context.
Neighborhood span268 564-270 754 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
268 564 nt270 754 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CT43_RS01450GCF_000193355#CT43_RS01450
RROmpR
268 564-269 265 nt · Forward (+)
CT43_RS01455GCF_000193355#CT43_RS01455
HKClassicCurrent focus
269 249-270 754 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161495#BTHUR0002_RS01230Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468232
Simplified PFAM architecture for HKOC_1468232
PFAM domain coverage: 219 / 501 aa (43.7%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[220-263] | HisKA[276-342] | HATPase_c[390-497]
- Domain count: 3
- Matched identifier: HKOC_1468232
- Positioned domains: HAMP 220-263 ; HisKA 276-342 ; HATPase_c 390-497
Cluster members and taxonomy
Representative gene: GCF_000161495#BTHUR0002_RS01230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 541 229 · GCF_000193355
AssemblyASM19335v1 · Complete Genomehaploid
Genome composition6 151 150 bp · 35,0% GCBacillus thuringiensis serovar chinensis CT-43
Signal transduction countsGenes 101 · HK 55 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key