1 Response_reg#1
9-133 aa · 125 aa · 50.4% of protein
Raw token
Response_reg:9:3.96e-29:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0177_RS06540
Response regulator NarL family
Bifidobacterium longum · GCF_000185665
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000185665#HMPREF0177_RS06540Stable P2CS identifier used across views.
GenomeGCF_000185665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 248 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-242 aa · 58 aa · 23.4% of protein
Raw token
HTH_LUXR:185:3.04e-23:242:58:58- Raw architecture: Response_reg:9:3.96e-29:133:125:111#HTH_LUXR:185:3.04e-23:242:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000185665::NZ_GL622629.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span92428-95860Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0177_00687RefSeq proteinWP_008783013.1
Context group ID
GCF_000185665::NZ_GL622629.1::G00009Context members
HMPREF0177_RS06545HMPREF0177_RS06540
Partner locus tags
HMPREF0177_RS06545HMPREF0177_RS06540
Partner old locus tags
HMPREF0177_00686HMPREF0177_00687
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008783013.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0177_RS06540Primary locus identifier stored in the genes table.
Old locus tagHMPREF0177_00687Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL622629.1Sequence record reported by the local genomic context database.
Genomic interval95 114-95 860 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 428-95 860 ntGCF_000185665::NZ_GL622629.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000185665::NZ_GL622629.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL622629.1All displayed genes belong to this local TCS context.
Neighborhood span92 428-95 860 nt3 433 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 428 nt95 860 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0177_RS06545GCF_000185665#HMPREF0177_RS06545
HKClassic
92 428-95 037 nt · Forward (+)
HMPREF0177_RS06540GCF_000185665#HMPREF0177_RS06540
RRNarLCurrent focus
95 114-95 860 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000185665#HMPREF0177_RS06540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0743383
Simplified PFAM architecture for RROC_0743383
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0743383
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_000185665#HMPREF0177_RS06540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_000185665
AssemblyASM18566v1 · Scaffoldhaploid
Genome composition2 405 990 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key