1 Response_reg#1
7-110 aa · 104 aa · 47.7% of protein
Raw token
Response_reg:7:0.00000000407:110:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0177_RS0110245
Response regulator, unclassified
Bifidobacterium longum · GCF_000185665
ClassRRTypeunclassifiedLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000185665#HMPREF0177_RS0110245Stable P2CS identifier used across views.
GenomeGCF_000185665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 218 aa (73.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 GerE#2
156-211 aa · 56 aa · 25.7% of protein
Raw token
GerE:156:0.0000000000000061:211:56:57- Raw architecture: Response_reg:7:0.00000000407:110:104:111#GerE:156:0.0000000000000061:211:56:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000185665::NZ_GL622634.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span110877-111533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0177_01184RefSeq proteinWP_011743731.1
Context group ID
GCF_000185665::NZ_GL622634.1::G00011Context members
HMPREF0177_RS0110245
Partner locus tags
HMPREF0177_RS0110245
Partner old locus tags
HMPREF0177_01184
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011743731.1Primary protein accession used for annex mappings.
UniProt accessionA1A3E0Primary UniProt accession resolved in the annex database.
UniProt IDA1A3E0_BIFAADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0177_RS0110245Primary locus identifier stored in the genes table.
Old locus tagHMPREF0177_01184Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL622634.1Sequence record reported by the local genomic context database.
Genomic interval110 877-111 533 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span110 877-111 533 ntGCF_000185665::NZ_GL622634.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000185665::NZ_GL622634.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL622634.1All displayed genes belong to this local TCS context.
Neighborhood span110 877-111 533 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 877 nt111 533 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0177_RS0110245GCF_000185665#HMPREF0177_RS0110245
RRunclassifiedCurrent focus
110 877-111 533 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010425#BAD_RS07600Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812010
Simplified PFAM architecture for RROC_1812010
PFAM domain coverage: 160 / 218 aa (73.4%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-111] | GerE[157-211]
- Domain count: 2
- Matched identifier: RROC_1812010
- Positioned domains: Response_reg 7-111 ; Response_reg 7-111 ; GerE 157-211 ; GerE 157-211
Cluster members and taxonomy
Representative gene: GCF_000010425#BAD_RS07600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_000185665
AssemblyASM18566v1 · Scaffoldhaploid
Genome composition2 405 990 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key