1 Response_reg#1
6-116 aa · 111 aa · 53.1% of protein
Raw token
Response_reg:6:1.94e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAO_RS00125
Response regulator NarL family
Bacillus anthracis str. A0174 · GCF_000182055
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000182055#BAO_RS00125Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 209 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-203 aa · 55 aa · 26.3% of protein
Raw token
HTH_LUXR:149:1.5e-24:203:55:58- Raw architecture: Response_reg:6:1.94e-36:116:111:111#HTH_LUXR:149:1.5e-24:203:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000182055::NZ_ABLT01000001.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16717-18457Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAO_2259RefSeq proteinWP_000694643.1
Context group ID
GCF_000182055::NZ_ABLT01000001.1::G00054Context members
BAO_RS00120BAO_RS00125
Partner locus tags
BAO_RS00120BAO_RS00125
Partner old locus tags
BAO_2258BAO_2259
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694643.1Primary protein accession used for annex mappings.
UniProt accessionQ6HJ99Primary UniProt accession resolved in the annex database.
UniProt IDQ6HJ99_BACHKDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAO_RS00125Primary locus identifier stored in the genes table.
Old locus tagBAO_2259Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABLT01000001.1Sequence record reported by the local genomic context database.
Genomic interval17 828-18 457 nt630 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 717-18 457 ntGCF_000182055::NZ_ABLT01000001.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000182055::NZ_ABLT01000001.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABLT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span16 717-18 457 nt1 741 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 717 nt18 457 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAO_RS00120GCF_000182055#BAO_RS00120
HKClassic
16 717-17 814 nt · Forward (+)
BAO_RS00125GCF_000182055#BAO_RS00125
RRNarLCurrent focus
17 828-18 457 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS10895Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2041082
Simplified PFAM architecture for RROC_2041082
PFAM domain coverage: 167 / 209 aa (79.9%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_2041082
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS10895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 486 622 · GCF_000182055
AssemblyASM18205v1 · Scaffoldhaploid
Genome composition5 291 908 bp · 35,0% GCBacillus anthracis str. A0174
Signal transduction countsGenes 92 · HK 43 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key