1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:5.63e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAH_RS13390
Response regulator OmpR family
Bacillus anthracis str. A0442 · GCF_000181935
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000181935#BAH_RS13390Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:3.15e-37:229:77:77- Raw architecture: Response_reg:6:5.63e-37:115:111:111#Trans_reg_C:153:3.15e-37:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000181935::NZ_ABKG01000006.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span105981-108171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAH_0296RefSeq proteinWP_000929883.1
Context group ID
GCF_000181935::NZ_ABKG01000006.1::G00029Context members
BAH_RS13385BAH_RS13390
Partner locus tags
BAH_RS13385BAH_RS13390
Partner old locus tags
BAH_0297BAH_0296
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000929883.1Primary protein accession used for annex mappings.
UniProt accessionA0A242WCU0Primary UniProt accession resolved in the annex database.
UniProt IDA0A242WCU0_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAH_RS13390Primary locus identifier stored in the genes table.
Old locus tagBAH_0296Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABKG01000006.1Sequence record reported by the local genomic context database.
Genomic interval107 470-108 171 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span105 981-108 171 ntGCF_000181935::NZ_ABKG01000006.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000181935::NZ_ABKG01000006.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABKG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span105 981-108 171 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 981 nt108 171 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAH_RS13385GCF_000181935#BAH_RS13385
HKClassic
105 981-107 486 nt · Reverse (-)
BAH_RS13390GCF_000181935#BAH_RS13390
RROmpRCurrent focus
107 470-108 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS01480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080361
Simplified PFAM architecture for RROC_1080361
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1080361
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS01480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 486 621 · GCF_000181935
AssemblyASM18193v1 · Scaffoldhaploid
Genome composition5 374 836 bp · 35,0% GCBacillus anthracis str. A0442
Signal transduction countsGenes 92 · HK 43 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key