1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:1.13e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAH_RS12505
Response regulator OmpR family
Bacillus anthracis str. A0442 · GCF_000181935
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000181935#BAH_RS12505Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 229 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.9% of protein
Raw token
Trans_reg_C:153:1.02e-29:225:76:77- Raw architecture: Response_reg:5:1.13e-35:114:111:111#Trans_reg_C:153:1.02e-29:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000181935::NZ_ABKG01000005.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span201697-204236Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAH_5113RefSeq proteinWP_001097097.1
Context group ID
GCF_000181935::NZ_ABKG01000005.1::G00033Context members
BAH_RS12500BAH_RS12505
Partner locus tags
BAH_RS12500BAH_RS12505
Partner old locus tags
BAH_5112BAH_5113
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001097097.1Primary protein accession used for annex mappings.
UniProt accessionB7JT78Primary UniProt accession resolved in the annex database.
UniProt IDB7JT78_BACC0Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAH_RS12505Primary locus identifier stored in the genes table.
Old locus tagBAH_5113Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABKG01000005.1Sequence record reported by the local genomic context database.
Genomic interval203 547-204 236 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span201 697-204 236 ntGCF_000181935::NZ_ABKG01000005.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000181935::NZ_ABKG01000005.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABKG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span201 697-204 236 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 697 nt204 236 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAH_RS12500GCF_000181935#BAH_RS12500
HKClassic
201 697-203 550 nt · Reverse (-)
BAH_RS12505GCF_000181935#BAH_RS12505
RROmpRCurrent focus
203 547-204 236 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS23805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246143
Simplified PFAM architecture for RROC_1246143
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1246143
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS23805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 486 621 · GCF_000181935
AssemblyASM18193v1 · Scaffoldhaploid
Genome composition5 374 836 bp · 35,0% GCBacillus anthracis str. A0442
Signal transduction countsGenes 92 · HK 43 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key