1 HAMP#1
55-122 aa · 68 aa · 20.4% of protein
Raw token
HAMP:55:0.000000177:122:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ_RS00340
Histidine kinase, Classic
Bacillus anthracis str. A0193 · GCF_000181915
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000181915#BAQ_RS00340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage204 / 333 aa (61.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 16.2% of protein
Raw token
HisKA:137:0.0000000954:190:54:643 HATPase_c#3
246-327 aa · 82 aa · 24.6% of protein
Raw token
HATPase_c:246:0.0000000000453:327:103:109- Raw architecture: HAMP:55:0.000000177:122:71:69#HisKA:137:0.0000000954:190:54:64#HATPase_c:246:0.0000000000453:327:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000181915::NZ_ABKF01000001.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59254-60923Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ_3117RefSeq proteinWP_001049586.1
Context group ID
GCF_000181915::NZ_ABKF01000001.1::G00057Context members
BAQ_RS00340BAQ_RS00345
Partner locus tags
BAQ_RS00340BAQ_RS00345
Partner old locus tags
BAQ_3117BAQ_3118
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001049586.1Primary protein accession used for annex mappings.
UniProt accessionA0A3P1U0X3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3P1U0X3_BACANDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ_RS00340Primary locus identifier stored in the genes table.
Old locus tagBAQ_3117Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABKF01000001.1Sequence record reported by the local genomic context database.
Genomic interval59 254-60 255 nt1 002 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 254-60 923 ntGCF_000181915::NZ_ABKF01000001.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000181915::NZ_ABKF01000001.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABKF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span59 254-60 923 nt1 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 254 nt60 923 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ_RS00340GCF_000181915#BAQ_RS00340
HKClassicCurrent focus
59 254-60 255 nt · Reverse (-)
BAQ_RS00345GCF_000181915#BAQ_RS00345
RROmpR
60 252-60 923 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS14585Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2851464
Simplified PFAM architecture for HKOC_2851464
PFAM domain coverage: 135 / 333 aa (40.5%)
1 aa333 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[137-191] | HATPase_c[247-326]
- Domain count: 2
- Matched identifier: HKOC_2851464
- Positioned domains: HisKA 137-191 ; HATPase_c 247-326
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS14585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 486 619 · GCF_000181915
AssemblyASM18191v1 · Scaffoldhaploid
Genome composition5 392 880 bp · 35,0% GCBacillus anthracis str. A0193
Signal transduction countsGenes 96 · HK 46 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key