1 Response_reg#1
13-122 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:13:1.62e-30:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECH7EC4045_RS00775
Response regulator OmpR family
Escherichia coli O157:H7 str. EC4045 · GCF_000181755
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000181755#ECH7EC4045_RS00775Stable P2CS identifier used across views.
GenomeGCF_000181755Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:156:2.7e-29:232:77:77- Raw architecture: Response_reg:13:1.62e-30:122:111:111#Trans_reg_C:156:2.7e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000181755::NZ_ABHL02000004.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span123001-125123Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECH7EC4045_A3124RefSeq proteinWP_000137884.1
Context group ID
GCF_000181755::NZ_ABHL02000004.1::G00001Context members
ECH7EC4045_RS00780ECH7EC4045_RS00775
Partner locus tags
ECH7EC4045_RS00780ECH7EC4045_RS00775
Partner old locus tags
ECH7EC4045_A3125ECH7EC4045_A3124
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000137884.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3H9X6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3H9X6_ECOLXDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECH7EC4045_RS00775Primary locus identifier stored in the genes table.
Old locus tagECH7EC4045_A3124Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABHL02000004.1Sequence record reported by the local genomic context database.
Genomic interval124 401-125 123 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span123 001-125 123 ntGCF_000181755::NZ_ABHL02000004.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000181755::NZ_ABHL02000004.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABHL02000004.1All displayed genes belong to this local TCS context.
Neighborhood span123 001-125 123 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 001 nt125 123 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECH7EC4045_RS00780GCF_000181755#ECH7EC4045_RS00780
HKClassic
123 001-124 404 nt · Forward (+)
ECH7EC4045_RS00775GCF_000181755#ECH7EC4045_RS00775
RROmpRCurrent focus
124 401-125 123 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008865#ECs_2887Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0881942
Simplified PFAM architecture for RROC_0881942
PFAM domain coverage: 186 / 240 aa (77.5%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0881942
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000008865#ECs_2887
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 444 448 · GCF_000181755
AssemblyASM18175v1 · Scaffoldhaploid
Genome composition5 634 850 bp · 50,5% GCEscherichia coli O157:H7 str. EC4045
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key