1 HAMP#1
39-107 aa · 69 aa · 19.7% of protein
Raw token
HAMP:39:0.000000000105:107:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPN7465_RS06525
Histidine kinase, Classic
Streptococcus pneumoniae SPN7465 · GCF_000180495
ClassHKTypeClassicLength350 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000180495#SPN7465_RS06525Stable P2CS identifier used across views.
GenomeGCF_000180495Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length350 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 350 aa (69.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa350 aa
Domain-by-domain annotation3 items
2 HisKA#2
119-180 aa · 62 aa · 17.7% of protein
Raw token
HisKA:119:0.0000000000013:180:62:643 HATPase_c#3
233-343 aa · 111 aa · 31.7% of protein
Raw token
HATPase_c:233:1.64e-32:343:111:109- Raw architecture: HAMP:39:0.000000000105:107:69:69#HisKA:119:0.0000000000013:180:62:64#HATPase_c:233:1.64e-32:343:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000180495::NZ_CACF01000002.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span349226-350973Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000180495::NZ_CACF01000002.1::G00009Context members
SPN7465_RS06525SPN7465_RS06530
Partner locus tags
SPN7465_RS06525SPN7465_RS06530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000769768.1Primary protein accession used for annex mappings.
UniProt accessionQ8DRK0Primary UniProt accession resolved in the annex database.
UniProt IDQ8DRK0_STRR6Display identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPN7465_RS06525Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CACF01000002.1Sequence record reported by the local genomic context database.
Genomic interval349 226-350 278 nt1 053 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span349 226-350 973 ntGCF_000180495::NZ_CACF01000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000180495::NZ_CACF01000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CACF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span349 226-350 973 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
349 226 nt350 973 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPN7465_RS06525GCF_000180495#SPN7465_RS06525
HKClassicCurrent focus
349 226-350 278 nt · Reverse (-)
SPN7465_RS06530GCF_000180495#SPN7465_RS06530
RROmpR
350 275-350 973 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006885#SP_RS00435Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2796907
Simplified PFAM architecture for HKOC_2796907
PFAM domain coverage: 216 / 350 aa (61.7%)
1 aa350 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[63-107] | HisKA[120-179] | HATPase_c[233-343]
- Domain count: 3
- Matched identifier: HKOC_2796907
- Positioned domains: HAMP 63-107 ; HisKA 120-179 ; HATPase_c 233-343
Cluster members and taxonomy
Representative gene: GCF_000006885#SP_RS00435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 869 313 · GCF_000180495
AssemblyASM18049v1 · Contighaploid
Genome composition2 084 938 bp · 39,5% GCStreptococcus pneumoniae SPN7465
Signal transduction countsGenes 27 · HK 13 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key