1 HAMP#1
160-229 aa · 70 aa · 15.6% of protein
Raw token
HAMP:160:0.0000000000439:229:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC536_RS0120035
Histidine kinase, Classic
Escherichia coli O157:H7 str. EC536 · GCF_000178795
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000178795#EC536_RS0120035Stable P2CS identifier used across views.
GenomeGCF_000178795Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 450 aa (52.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-293 aa · 60 aa · 13.3% of protein
Raw token
HisKA:234:0.00000000000347:293:63:643 HATPase_c#3
334-439 aa · 106 aa · 23.6% of protein
Raw token
HATPase_c:334:1.99e-27:439:109:109- Raw architecture: HAMP:160:0.0000000000439:229:70:69#HisKA:234:0.00000000000347:293:63:64#HATPase_c:334:1.99e-27:439:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000178795::NZ_ADVC01000563.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4094-6162Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000178795::NZ_ADVC01000563.1::G00009Context members
EC536_RS0120030EC536_RS0120035
Partner locus tags
EC536_RS0120030EC536_RS0120035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001253697.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3PTN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3PTN3_ECO5CDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC536_RS0120035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_ADVC01000563.1Sequence record reported by the local genomic context database.
Genomic interval4 810-6 162 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 094-6 162 ntGCF_000178795::NZ_ADVC01000563.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000178795::NZ_ADVC01000563.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ADVC01000563.1All displayed genes belong to this local TCS context.
Neighborhood span4 094-6 162 nt2 069 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 094 nt6 162 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC536_RS0120030GCF_000178795#EC536_RS0120030
RROmpR
4 094-4 813 nt · Forward (+)
EC536_RS0120035GCF_000178795#EC536_RS0120035
HKClassicCurrent focus
4 810-6 162 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006665#Z_RS22390Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1962044
Simplified PFAM architecture for HKOC_1962044
PFAM domain coverage: 213 / 450 aa (47.3%)
1 aa450 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[177-226] | HisKA[234-290] | HATPase_c[334-439]
- Domain count: 3
- Matched identifier: HKOC_1962044
- Positioned domains: HAMP 177-226 ; HisKA 234-290 ; HATPase_c 334-439
Cluster members and taxonomy
Representative gene: GCF_000006665#Z_RS22390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 702 436 · GCF_000178795
AssemblyASM17879v1 · Contighaploid
Genome composition5 262 452 bp · 50,0% GCEscherichia coli O157:H7 str. EC536
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key