1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:9.92e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0351_RS04460
Response regulator NarL family
Enterococcus faecium DO · GCF_000174395
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000174395#HMPREF0351_RS04460Stable P2CS identifier used across views.
GenomeGCF_000174395Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:4.04e-24:203:58:58- Raw architecture: Response_reg:4:9.92e-28:116:113:111#HTH_LUXR:146:4.04e-24:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000174395::NC_017960.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span913746-915452Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0351_10938RefSeq proteinWP_002289153.1
Context group ID
GCF_000174395::NC_017960.1::G00005Context members
HMPREF0351_RS04455HMPREF0351_RS04460
Partner locus tags
HMPREF0351_RS04455HMPREF0351_RS04460
Partner old locus tags
HMPREF0351_10937HMPREF0351_10938
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002289153.1Primary protein accession used for annex mappings.
UniProt accessionQ3XXY6Primary UniProt accession resolved in the annex database.
UniProt IDQ3XXY6_ENTFDDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0351_RS04460Primary locus identifier stored in the genes table.
Old locus tagHMPREF0351_10938Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017960.1Sequence record reported by the local genomic context database.
Genomic interval914 820-915 452 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span913 746-915 452 ntGCF_000174395::NC_017960.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000174395::NC_017960.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017960.1All displayed genes belong to this local TCS context.
Neighborhood span913 746-915 452 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
913 746 nt915 452 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0351_RS04455GCF_000174395#HMPREF0351_RS04455
HKClassic
913 746-914 813 nt · Forward (+)
HMPREF0351_RS04460GCF_000174395#HMPREF0351_RS04460
RRNarLCurrent focus
914 820-915 452 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157435#EFPG_RS11370Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2019059
Simplified PFAM architecture for RROC_2019059
PFAM domain coverage: 169 / 210 aa (80.5%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_2019059
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_000157435#EFPG_RS11370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 333 849 · GCF_000174395
AssemblyASM17439v2 · Complete Genomehaploid
Genome composition3 052 572 bp · 38,0% GCEnterococcus faecium DO
Signal transduction countsGenes 37 · HK 17 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key