1 Response_reg#1
4-114 aa · 111 aa · 50.0% of protein
Raw token
Response_reg:4:1.4e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0351_RS02045
Response regulator OmpR family
Enterococcus faecium DO · GCF_000174395
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000174395#HMPREF0351_RS02045Stable P2CS identifier used across views.
GenomeGCF_000174395Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 222 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-219 aa · 71 aa · 32.0% of protein
Raw token
Trans_reg_C:149:6.59e-24:219:73:77- Raw architecture: Response_reg:4:1.4e-35:114:111:111#Trans_reg_C:149:6.59e-24:219:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000174395::NC_017960.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span426487-427155Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0351_10436RefSeq proteinWP_002286323.1
Context group ID
GCF_000174395::NC_017960.1::G00001Context members
HMPREF0351_RS02045
Partner locus tags
HMPREF0351_RS02045
Partner old locus tags
HMPREF0351_10436
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002286323.1Primary protein accession used for annex mappings.
UniProt accessionA0A829FDV1Primary UniProt accession resolved in the annex database.
UniProt IDA0A829FDV1_ENTFCDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0351_RS02045Primary locus identifier stored in the genes table.
Old locus tagHMPREF0351_10436Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017960.1Sequence record reported by the local genomic context database.
Genomic interval426 487-427 155 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span426 487-427 155 ntGCF_000174395::NC_017960.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000174395::NC_017960.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017960.1All displayed genes belong to this local TCS context.
Neighborhood span426 487-427 155 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
426 487 nt427 155 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0351_RS02045GCF_000174395#HMPREF0351_RS02045
RROmpRCurrent focus
426 487-427 155 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148025#HMPREF9522_RS15755Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637572
Simplified PFAM architecture for RROC_1637572
PFAM domain coverage: 181 / 222 aa (81.5%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-219]
- Domain count: 2
- Matched identifier: RROC_1637572
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-219 ; Trans_reg_C 149-219
Cluster members and taxonomy
Representative gene: GCF_000148025#HMPREF9522_RS15755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 333 849 · GCF_000174395
AssemblyASM17439v2 · Complete Genomehaploid
Genome composition3 052 572 bp · 38,0% GCEnterococcus faecium DO
Signal transduction countsGenes 37 · HK 17 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key