1 HisKA#1
74-137 aa · 64 aa · 21.5% of protein
Raw token
HisKA:74:0.00000000000544:137:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1679_RS09600
Histidine kinase, Classic
Enterococcus faecium E1679 · GCF_000172875
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172875#EFME1679_RS09600Stable P2CS identifier used across views.
GenomeGCF_000172875Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 298 aa (58.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
187-297 aa · 111 aa · 37.2% of protein
Raw token
HATPase_c:187:1.35e-26:297:113:109- Raw architecture: HisKA:74:0.00000000000544:137:64:64#HATPase_c:187:1.35e-26:297:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172875::NZ_ABSC01000180.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7123-8931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1679_2084RefSeq proteinWP_002301487.1
Context group ID
GCF_000172875::NZ_ABSC01000180.1::G00012Context members
EFME1679_RS09600EFME1679_RS09610
Partner locus tags
EFME1679_RS09600EFME1679_RS09610
Partner old locus tags
EfmE1679_2084EfmE1679_2086
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002301487.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1679_RS09600Primary locus identifier stored in the genes table.
Old locus tagEfmE1679_2084Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABSC01000180.1Sequence record reported by the local genomic context database.
Genomic interval7 123-8 019 nt897 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 123-8 931 ntGCF_000172875::NZ_ABSC01000180.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172875::NZ_ABSC01000180.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABSC01000180.1All displayed genes belong to this local TCS context.
Neighborhood span7 123-8 931 nt1 809 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 123 nt8 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1679_RS09600GCF_000172875#EFME1679_RS09600
HKClassicCurrent focus
7 123-8 019 nt · Reverse (-)
EFME1679_RS09610GCF_000172875#EFME1679_RS09610
RROmpR
8 230-8 931 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172875#EFME1679_RS09600The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888648
Simplified PFAM architecture for HKOC_2888648
PFAM domain coverage: 175 / 298 aa (58.7%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[75-138] | HATPase_c[187-297]
- Domain count: 2
- Matched identifier: HKOC_2888648
- Positioned domains: HisKA 75-138 ; HATPase_c 187-297
Cluster members and taxonomy
Representative gene: GCF_000172875#EFME1679_RS09600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 546 340 · GCF_000172875
AssemblyASM17287v1 · Contighaploid
Genome composition2 928 184 bp · 37,5% GCEnterococcus faecium E1679
Signal transduction countsGenes 38 · HK 20 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key