1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.00000263:211:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1679_RS02365
Histidine kinase, Classic
Enterococcus faecium E1679 · GCF_000172875
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172875#EFME1679_RS02365Stable P2CS identifier used across views.
GenomeGCF_000172875Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage211 / 439 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-296 aa · 65 aa · 14.8% of protein
Raw token
HisKA:232:0.00000438:296:65:643 HATPase_c#3
342-419 aa · 78 aa · 17.8% of protein
Raw token
HATPase_c:342:0.00000579:419:90:109- Raw architecture: HAMP:144:0.00000263:211:70:69#HisKA:232:0.00000438:296:65:64#HATPase_c:342:0.00000579:419:90:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172875::NZ_ABSC01000039.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2554-4523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1679_0494RefSeq proteinWP_002300494.1
Context group ID
GCF_000172875::NZ_ABSC01000039.1::G00021Context members
EFME1679_RS02365EFME1679_RS02370
Partner locus tags
EFME1679_RS02365EFME1679_RS02370
Partner old locus tags
EfmE1679_0494EfmE1679_0495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002300494.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3GTK6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3GTK6_ENTFCDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1679_RS02365Primary locus identifier stored in the genes table.
Old locus tagEfmE1679_0494Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABSC01000039.1Sequence record reported by the local genomic context database.
Genomic interval2 554-3 873 nt1 320 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 554-4 523 ntGCF_000172875::NZ_ABSC01000039.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172875::NZ_ABSC01000039.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABSC01000039.1All displayed genes belong to this local TCS context.
Neighborhood span2 554-4 523 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 554 nt4 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1679_RS02365GCF_000172875#EFME1679_RS02365
HKClassicCurrent focus
2 554-3 873 nt · Reverse (-)
EFME1679_RS02370GCF_000172875#EFME1679_RS02370
RROmpR
3 870-4 523 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148325#HMPREF9524_RS07250Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2082279
Simplified PFAM architecture for HKOC_2082279
PFAM domain coverage: 147 / 439 aa (33.5%)
1 aa439 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-296] | HATPase_c[342-424]
- Domain count: 2
- Matched identifier: HKOC_2082279
- Positioned domains: HisKA 233-296 ; HATPase_c 342-424
Cluster members and taxonomy
Representative gene: GCF_000148325#HMPREF9524_RS07250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 546 340 · GCF_000172875
AssemblyASM17287v1 · Contighaploid
Genome composition2 928 184 bp · 37,5% GCEnterococcus faecium E1679
Signal transduction countsGenes 38 · HK 20 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key