1 HisKA#1
162-229 aa · 68 aa · 17.3% of protein
Raw token
HisKA:162:0.0000000000000588:229:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OG1RF_RS12985
Histidine kinase, Classic
Enterococcus faecalis OG1RF · GCF_000172575
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172575#OG1RF_RS12985Stable P2CS identifier used across views.
GenomeGCF_000172575Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 393 aa (45.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
275-386 aa · 112 aa · 28.5% of protein
Raw token
HATPase_c:275:1.06e-29:386:113:109- Raw architecture: HisKA:162:0.0000000000000588:229:68:64#HATPase_c:275:1.06e-29:386:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172575::NC_017316.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2692385-2694245Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOG1RF_12536RefSeq proteinWP_014525065.1
Context group ID
GCF_000172575::NC_017316.1::G00015Context members
OG1RF_RS12980OG1RF_RS12985
Partner locus tags
OG1RF_RS12980OG1RF_RS12985
Partner old locus tags
OG1RF_12535OG1RF_12536
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_014525065.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOG1RF_RS12985Primary locus identifier stored in the genes table.
Old locus tagOG1RF_12536Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017316.1Sequence record reported by the local genomic context database.
Genomic interval2 693 064-2 694 245 nt1 182 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 692 385-2 694 245 ntGCF_000172575::NC_017316.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172575::NC_017316.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017316.1All displayed genes belong to this local TCS context.
Neighborhood span2 692 385-2 694 245 nt1 861 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 692 385 nt2 694 245 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OG1RF_RS12980GCF_000172575#OG1RF_RS12980
RROmpR
2 692 385-2 693 074 nt · Forward (+)
OG1RF_RS12985GCF_000172575#OG1RF_RS12985
HKClassicCurrent focus
2 693 064-2 694 245 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172575#OG1RF_RS12985The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503324
Simplified PFAM architecture for HKOC_2503324
PFAM domain coverage: 177 / 393 aa (45.0%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[163-228] | HATPase_c[275-385]
- Domain count: 2
- Matched identifier: HKOC_2503324
- Positioned domains: HisKA 163-228 ; HATPase_c 275-385
Cluster members and taxonomy
Representative gene: GCF_000172575#OG1RF_RS12985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 474 186 · GCF_000172575
AssemblyASM17257v2 · Complete Genomehaploid
Genome composition2 739 625 bp · 38,0% GCEnterococcus faecalis OG1RF
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key