1 Response_reg#1
3-123 aa · 121 aa · 49.8% of protein
Raw token
Response_reg:3:0.00000622:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OG1RF_RS07850
Response regulator LytTR family
Enterococcus faecalis OG1RF · GCF_000172575
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172575#OG1RF_RS07850Stable P2CS identifier used across views.
GenomeGCF_000172575Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage214 / 243 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-241 aa · 93 aa · 38.3% of protein
Raw token
LytTR:149:2.12e-21:241:98:98- Raw architecture: Response_reg:3:0.00000622:123:121:111#LytTR:149:2.12e-21:241:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172575::NC_017316.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1591435-1592166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOG1RF_11529RefSeq proteinWP_002414298.1
Context group ID
GCF_000172575::NC_017316.1::G00009Context members
OG1RF_RS07850
Partner locus tags
OG1RF_RS07850
Partner old locus tags
OG1RF_11529
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002414298.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOG1RF_RS07850Primary locus identifier stored in the genes table.
Old locus tagOG1RF_11529Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017316.1Sequence record reported by the local genomic context database.
Genomic interval1 591 435-1 592 166 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 591 435-1 592 166 ntGCF_000172575::NC_017316.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172575::NC_017316.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017316.1All displayed genes belong to this local TCS context.
Neighborhood span1 591 435-1 592 166 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 591 435 nt1 592 166 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OG1RF_RS07850GCF_000172575#OG1RF_RS07850
RRLytTRCurrent focus
1 591 435-1 592 166 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172575#OG1RF_RS07850The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824858
Simplified PFAM architecture for RROC_0824858
PFAM domain coverage: 197 / 243 aa (81.1%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[16-122] | LytTR[151-240]
- Domain count: 2
- Matched identifier: RROC_0824858
- Positioned domains: Response_reg 16-122 ; Response_reg 16-122 ; LytTR 151-240 ; LytTR 151-240
Cluster members and taxonomy
Representative gene: GCF_000172575#OG1RF_RS07850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 474 186 · GCF_000172575
AssemblyASM17257v2 · Complete Genomehaploid
Genome composition2 739 625 bp · 38,0% GCEnterococcus faecalis OG1RF
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key