1 Response_reg#1
4-114 aa · 111 aa · 54.4% of protein
Raw token
Response_reg:4:5.33e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECH7EC508_RS17055
Response regulator, unclassified
Escherichia coli O157:H7 str. EC508 · GCF_000172055
ClassRRTypeunclassifiedLength204 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172055#ECH7EC508_RS17055Stable P2CS identifier used across views.
GenomeGCF_000172055Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length204 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 204 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa204 aa
Domain-by-domain annotation2 items
2 GerE#2
142-198 aa · 57 aa · 27.9% of protein
Raw token
GerE:142:3.94e-22:198:57:57- Raw architecture: Response_reg:4:5.33e-34:114:111:111#GerE:142:3.94e-22:198:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172055::NZ_ABHW01000024.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39360-43572Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECH7EC508_3497RefSeq proteinWP_000991370.1
Context group ID
GCF_000172055::NZ_ABHW01000024.1::G00013Context members
ECH7EC508_RS17055ECH7EC508_RS17060
Partner locus tags
ECH7EC508_RS17055ECH7EC508_RS17060
Partner old locus tags
ECH7EC508_3497ECH7EC508_3498
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000991370.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0KVS7Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0KVS7_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECH7EC508_RS17055Primary locus identifier stored in the genes table.
Old locus tagECH7EC508_3497Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABHW01000024.1Sequence record reported by the local genomic context database.
Genomic interval39 360-39 974 nt615 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 360-43 572 ntGCF_000172055::NZ_ABHW01000024.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172055::NZ_ABHW01000024.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABHW01000024.1All displayed genes belong to this local TCS context.
Neighborhood span39 360-43 572 nt4 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 360 nt43 572 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECH7EC508_RS17055GCF_000172055#ECH7EC508_RS17055
RRunclassifiedCurrent focus
39 360-39 974 nt · Forward (+)
ECH7EC508_RS17060GCF_000172055#ECH7EC508_RS17060
HKUnorthodox
39 979-43 572 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040893565#WMQ18_RS20925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2016061
Simplified PFAM architecture for RROC_2016061
PFAM domain coverage: 168 / 211 aa (79.6%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-114] | GerE[142-198]
- Domain count: 2
- Matched identifier: RROC_2016061
- Positioned domains: Response_reg 4-114 ; GerE 142-198
Cluster members and taxonomy
Representative gene: GCF_040893565#WMQ18_RS20925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 478 007 · GCF_000172055
AssemblyASM17205v1 · Contighaploid
Genome composition5 656 666 bp · 50,5% GCEscherichia coli O157:H7 str. EC508
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key