1 Response_reg#1
4-116 aa · 113 aa · 54.1% of protein
Raw token
Response_reg:4:5.91e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECH7EC508_RS14755
Response regulator, unclassified
Escherichia coli O157:H7 str. EC508 · GCF_000172055
ClassRRTypeunclassifiedLength209 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172055#ECH7EC508_RS14755Stable P2CS identifier used across views.
GenomeGCF_000172055Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 209 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 GerE#2
144-200 aa · 57 aa · 27.3% of protein
Raw token
GerE:144:8.73e-22:200:57:57- Raw architecture: Response_reg:4:5.91e-28:116:113:111#GerE:144:8.73e-22:200:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172055::NZ_ABHW01000019.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5860-8030Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECH7EC508_0624RefSeq proteinWP_000621918.1
Context group ID
GCF_000172055::NZ_ABHW01000019.1::G00018Context members
ECH7EC508_RS14750ECH7EC508_RS14755
Partner locus tags
ECH7EC508_RS14750ECH7EC508_RS14755
Partner old locus tags
ECH7EC508_0623ECH7EC508_0624
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000621918.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3HGE6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3HGE6_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECH7EC508_RS14755Primary locus identifier stored in the genes table.
Old locus tagECH7EC508_0624Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABHW01000019.1Sequence record reported by the local genomic context database.
Genomic interval7 401-8 030 nt630 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 860-8 030 ntGCF_000172055::NZ_ABHW01000019.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172055::NZ_ABHW01000019.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABHW01000019.1All displayed genes belong to this local TCS context.
Neighborhood span5 860-8 030 nt2 171 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 860 nt8 030 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECH7EC508_RS14750GCF_000172055#ECH7EC508_RS14750
HKClassic
5 860-7 401 nt · Reverse (-)
ECH7EC508_RS14755GCF_000172055#ECH7EC508_RS14755
RRunclassifiedCurrent focus
7 401-8 030 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006665#Z_RS02125Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2041074
Simplified PFAM architecture for RROC_2041074
PFAM domain coverage: 169 / 209 aa (80.9%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[145-200]
- Domain count: 2
- Matched identifier: RROC_2041074
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 145-200 ; GerE 145-200
Cluster members and taxonomy
Representative gene: GCF_000006665#Z_RS02125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 478 007 · GCF_000172055
AssemblyASM17205v1 · Contighaploid
Genome composition5 656 666 bp · 50,5% GCEscherichia coli O157:H7 str. EC508
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key