1 HisKA#1
133-197 aa · 65 aa · 18.3% of protein
Raw token
HisKA:133:0.00000000000778:197:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMGNA_RS06905
Histidine kinase, Classic
Mediterraneibacter gnavus ATCC 29149 · GCF_000169475
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169475#RUMGNA_RS06905Stable P2CS identifier used across views.
GenomeGCF_000169475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 356 aa (49.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-350 aa · 110 aa · 30.9% of protein
Raw token
HATPase_c:241:1.63e-25:350:111:109- Raw architecture: HisKA:133:0.00000000000778:197:65:64#HATPase_c:241:1.63e-25:350:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169475::NZ_AAYG02000011.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span297354-299130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMGNA_01572RefSeq proteinWP_009245163.1
Context group ID
GCF_000169475::NZ_AAYG02000011.1::G00035Context members
RUMGNA_RS06900RUMGNA_RS06905
Partner locus tags
RUMGNA_RS06900RUMGNA_RS06905
Partner old locus tags
RUMGNA_01571RUMGNA_01572
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245163.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NGL3Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NGL3_MEDG5Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMGNA_RS06905Primary locus identifier stored in the genes table.
Old locus tagRUMGNA_01572Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAYG02000011.1Sequence record reported by the local genomic context database.
Genomic interval298 060-299 130 nt1 071 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span297 354-299 130 ntGCF_000169475::NZ_AAYG02000011.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169475::NZ_AAYG02000011.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAYG02000011.1All displayed genes belong to this local TCS context.
Neighborhood span297 354-299 130 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
297 354 nt299 130 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMGNA_RS06900GCF_000169475#RUMGNA_RS06900
RROmpR
297 354-298 067 nt · Reverse (-)
RUMGNA_RS06905GCF_000169475#RUMGNA_RS06905
HKClassicCurrent focus
298 060-299 130 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS06905The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2770232
Simplified PFAM architecture for HKOC_2770232
PFAM domain coverage: 281 / 356 aa (78.9%)
1 aa356 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[10-117] | HisKA[132-196] | HATPase_c[242-349]
- Domain count: 3
- Matched identifier: HKOC_2770232
- Positioned domains: DUF4118 10-117 ; HisKA 132-196 ; HATPase_c 242-349
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS06905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_000169475
AssemblyASM16947v1 · Contighaploid
Genome composition3 501 911 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key