1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:1.68e-18:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAVO_RS12780
Response regulator, unclassified
Bacillus anthracis str. Vollum · GCF_000167275
ClassRRTypeunclassifiedLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000167275#BAVO_RS12780Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 225 aa (50.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.68e-18:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000167275::NZ_AAEP01000028.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span186039-186716Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000167275::NZ_AAEP01000028.1::G00039Context members
BAVO_RS12780
Partner locus tags
BAVO_RS12780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000921528.1Primary protein accession used for annex mappings.
UniProt accessionA0AAC8N939Primary UniProt accession resolved in the annex database.
UniProt IDA0AAC8N939_BACANDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAVO_RS12780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AAEP01000028.1Sequence record reported by the local genomic context database.
Genomic interval186 039-186 716 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span186 039-186 716 ntGCF_000167275::NZ_AAEP01000028.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000167275::NZ_AAEP01000028.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAEP01000028.1All displayed genes belong to this local TCS context.
Neighborhood span186 039-186 716 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
186 039 nt186 716 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAVO_RS12780GCF_000167275#BAVO_RS12780
RRunclassifiedCurrent focus
186 039-186 716 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS04815Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1462576
Simplified PFAM architecture for RROC_1462576
PFAM domain coverage: 177 / 225 aa (78.7%)
1 aa225 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[4-115] | HTH_64[158-222]
- Domain count: 2
- Matched identifier: RROC_1462576
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_64 158-222 ; HTH_64 158-222
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS04815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 261 591 · GCF_000167275
AssemblyASM16727v1 · Scaffoldhaploid
Genome composition5 488 459 bp · 35,0% GCBacillus anthracis str. Vollum
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key